GitHub - likit/BioUtils: Python scripts for miscellaneous bioinformatics stuff.

likit / BioUtils Public

Python scripts for miscellaneous bioinformatics stuff.

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Name		Name	Last commit message	Last commit date
Latest commit History 61 Commits
LICENSE.md		LICENSE.md
README.txt		README.txt
assemgraph.py		assemgraph.py
assemgraph2.py		assemgraph2.py
bed2bed.py		bed2bed.py
david2expr.py		david2expr.py
dexseq_exon_change.py		dexseq_exon_change.py
dexseq_filter.py		dexseq_filter.py
extract_alignments_psl.py		extract_alignments_psl.py
extract_mapped_seq.py		extract_mapped_seq.py
fasta2bed.py		fasta2bed.py
fetch_entrez_from_geneid.py		fetch_entrez_from_geneid.py
fetch_entrez_seq.py		fetch_entrez_seq.py
gene_model_match.py		gene_model_match.py
gene_overlap.py		gene_overlap.py
genome_var.py		genome_var.py
get_align_sequence_psl.py		get_align_sequence_psl.py
get_ens_name.py		get_ens_name.py
get_fasta_seq.py		get_fasta_seq.py
get_reads_from_sam.py		get_reads_from_sam.py
header_to_bed.py		header_to_bed.py
interval-coverage-bed.py		interval-coverage-bed.py
json_parser.py		json_parser.py
locate_promoter_from_peaks.py		locate_promoter_from_peaks.py
map2CisGenome.py		map2CisGenome.py
mapped_seq.py		mapped_seq.py
oligo_formatter_mothur.sh		oligo_formatter_mothur.sh
psl_cov.py		psl_cov.py
qsub.py		qsub.py
read_error_profile.py		read_error_profile.py
remove_seq_with_barcode.py		remove_seq_with_barcode.py
rename_exon_region.py		rename_exon_region.py
sam2fq.py		sam2fq.py
size_select.py		size_select.py
split-paired.py		split-paired.py
split_fasta.py		split_fasta.py
split_sequence.py		split_sequence.py
transcript2gene.py		transcript2gene.py
unmapped_seq.py		unmapped_seq.py
unmapped_seq2.py		unmapped_seq2.py
unmapped_seq3.py		unmapped_seq3.py

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A collection of custom Python scripts for bioinformatics research.

Python scripts for miscellaneous bioinformatics stuff.

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