ONT-lineage-tracing

This repository contains analyses performed to generate figures of Penter, Borji & Nagler et al., Nature Communications 2024.

intermediate files

The data needed to reproduce the analyses will be hosted on OSF. They need to be downloaded and used to populate the data/ folder.

Main figures

The code for the panels of the main figures can be found here. See individual subdirectories for further indications.

Figure 1 | benchmarking
Figure 2 | TCR, benchmarking
Figure 3 | benchmarking
Figure 4 | AML
Figure 5 | AML
Figure 6 | AML, ALL
Figure 7 | AML, CAR
Figure 8 | isoforms

Supplementary figures

The code for the panels of the supplementary figures can be found here. See individual subdirectories for further indications.

Suppl. Fig. 1 | benchmarking
Suppl. Fig. 2 | benchmarking
Suppl. Fig. 3 | benchmarking
Suppl. Fig. 4 | benchmarking
Suppl. Fig. 5 | benchmarking
Suppl. Fig. 6 | benchmarking
Suppl. Fig. 7 | AML
Suppl. Fig. 8 | AML
Suppl. Fig. 9 | AML
Suppl. Fig. 10 | AML
Suppl. Fig. 11 | AML
Suppl. Fig. 12 | AML, ALL
Suppl. Fig. 13 | CAR
Suppl. Fig. 14 | isoforms