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1. Benchmark_Microbiote_Metabolite Benchmark_Microbiote_Metabolite Public

   Codes to simulate data and apply "state-of-art" approaches for integrative analyses between microbiome and metabolome data

   R 2

2. Benchmark_Integration_Metagenomics_Metabolomics Benchmark_Integration_Metagenomics_Metabolomics Public

   This repo is related to our benchmark entitled: "Decoding the microbiome-metabolome Nexus: A Systematic Benchmark of Integrative Strategies". We provide code to integrate metagenomics and metabolom…

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3. CRHs CRHs Public

   Code and data to build and use Cis-Regulatory Hubs.

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4. Simulation_RetroFun-RVS Simulation_RetroFun-RVS Public

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5. CRHs_Profil CRHs_Profil Public

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6. RetroFun-RVS RetroFun-RVS Public

   Code to use RetroFun-RVS

   R 1