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@lpantano lpantano released this 09 May 19:34
· 27 commits to master since this release
v1.2.4
91ce836
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Learn about vigilant mode.
  • Fix multiple errors when running in python 3 due to map function.
  • Fix error in collapsing fasta files.
  • Fix end of line character for counts_sequence.tsv.
  • Remove map function from quality class in collapse function to avoid seg.fault in python3.
  • Use DESeq2 normalization strategy.
  • Fix more errors in python3 env.
  • Fix UMI checking when the input file is a gzip file. Thanks to @rbatorsky-claritas.
  • Fix header bug
  • Initiate migration to py3*. Thanks to @smoe.
  • Include mirtop annotation.
  • Fix upgrade command.
  • Fix UMIs detection to count using unique seq + umi. Thanks to @mshadbolt
  • Remove Cpy code and use biopython
  • Clean test examples
  • Fix UMI error when sequences have different sizes. Thanks to @mshadbolt
  • Support UMI tag when collapsing
  • Add count matrix for each sequence
  • Remove HTML report
  • Allow size parameter during collapsing reads
  • Fix reporting DB when precursor is masked
  • Add conflict to output
  • Fix bug in prepare sample that will setup min-shared
    to samples size always.
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