Skip to content
/ ABM_flow_migrate_angio_v2_overlapping_ellipses_release Public

An agent-based model of angiogenic remodelling based on force transmission between overlapping ellipses. Published in Front Cell Dev Biol (May 2022).

License

GPL-3.0 license
1 star 0 forks Branches Tags Activity
Star
Notifications You must be signed in to change notification settings

ltedgar-ed/ABM_flow_migrate_angio_v2_overlapping_ellipses_release

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
ABM_flow_migrate_main.py
ABM_flow_migrate_main.py
 
 
Bifurcation.py
Bifurcation.py
 
 
DGraph.py
DGraph.py
 
 
ECell.py
ECell.py
 
 
Flow.py
Flow.py
 
 
Geom.py
Geom.py
 
 
Graph.py
Graph.py
 
 
Input.py
Input.py
 
 
LICENSE
LICENSE
 
 
LTETools.py
LTETools.py
 
 
Network.py
Network.py
 
 
Output.py
Output.py
 
 
POE.py
POE.py
 
 
README.md
README.md
 
 
Vessel.py
Vessel.py
 
 
count_flow_events.m
count_flow_events.m
 
 
find_angle2D.m
find_angle2D.m
 
 
flow_events_4cells.mat
flow_events_4cells.mat
 
 
flow_events_6cells.mat
flow_events_6cells.mat
 
 
generate_ideal_cap_bed.m
generate_ideal_cap_bed.m
 
 
ideal_cap_bed.mat
ideal_cap_bed.mat
 
 
ideal_cap_bed_1x1.mat
ideal_cap_bed_1x1.mat
 
 
ideal_cap_bed_3x2.mat
ideal_cap_bed_3x2.mat
 
 
ideal_cap_bed_3x3.mat
ideal_cap_bed_3x3.mat
 
 
ideal_cap_bed_3x3_flow_paths.mat
ideal_cap_bed_3x3_flow_paths.mat
 
 
look_for_AVM.m
look_for_AVM.m
 
 
look_for_overlap.m
look_for_overlap.m
 
 
plot_ABM_output_A_branch.m
plot_ABM_output_A_branch.m
 
 
plot_ABM_output_A_branch_3D_polarity.m
plot_ABM_output_A_branch_3D_polarity.m
 
 
plot_ABM_output_A_branch_3D_velocity.m
plot_ABM_output_A_branch_3D_velocity.m
 
 
plot_ABM_output_A_branch_manual.m
plot_ABM_output_A_branch_manual.m
 
 
plot_ABM_output_PD_curve.m
plot_ABM_output_PD_curve.m
 
 
plot_ABM_output_demo_vess.m
plot_ABM_output_demo_vess.m
 
 
plot_ABM_output_ideal_cap_bed_3D_WSS.m
plot_ABM_output_ideal_cap_bed_3D_WSS.m
 
 
plot_ABM_output_ideal_cap_bed_3D_cell_traj.m
plot_ABM_output_ideal_cap_bed_3D_cell_traj.m
 
 
plot_ABM_output_ideal_cap_bed_3D_diameter.m
plot_ABM_output_ideal_cap_bed_3D_diameter.m
 
 
plot_ABM_output_ideal_cap_bed_3D_flow.m
plot_ABM_output_ideal_cap_bed_3D_flow.m
 
 
plot_ABM_output_ideal_cap_bed_3D_flow_with_polarity.m
plot_ABM_output_ideal_cap_bed_3D_flow_with_polarity.m
 
 
plot_ABM_output_ideal_cap_bed_3D_flow_with_polarity_zoom.m
plot_ABM_output_ideal_cap_bed_3D_flow_with_polarity_zoom.m
 
 
plot_ABM_output_ideal_cap_bed_3D_polarity.m
plot_ABM_output_ideal_cap_bed_3D_polarity.m
 
 
plot_ABM_output_ideal_cap_bed_3D_pressure.m
plot_ABM_output_ideal_cap_bed_3D_pressure.m
 
 
plot_ABM_output_ideal_cap_bed_3D_velocity.m
plot_ABM_output_ideal_cap_bed_3D_velocity.m
 
 
plot_ABM_output_ideal_cap_bed_cell_traj_hist.m
plot_ABM_output_ideal_cap_bed_cell_traj_hist.m
 
 
plot_ABM_output_ideal_cap_bed_diameter_hist.m
plot_ABM_output_ideal_cap_bed_diameter_hist.m
 
 
plot_ABM_output_ideal_cap_bed_velocity_hist.m
plot_ABM_output_ideal_cap_bed_velocity_hist.m
 
 
plot_ellipse_on_cylinder.m
plot_ellipse_on_cylinder.m
 
 
plot_ellipse_on_cylinder_color.m
plot_ellipse_on_cylinder_color.m
 
 
plot_flow_events_4cells.m
plot_flow_events_4cells.m
 
 
plot_flow_events_6cells.m
plot_flow_events_6cells.m
 
 
plot_flow_paths.m
plot_flow_paths.m
 
 
random_seed_numbers.py
random_seed_numbers.py
 
 
track_disappearing_cells.m
track_disappearing_cells.m
 
 

Repository files navigation

ABM_flow_migrate_angio_v2_overlapping_ellipses_release

An agent-based model of angiogenic remodeling based on force transmission between overlapping ellipses

Lowell Taylor Edgar, Usher Institute, University of Edinburgh

2021

About

An agent-based model of angiogenic remodelling based on force transmission between overlapping ellipses. Published in Front Cell Dev Biol (May 2022).

Topics

flow biomechanics agent-based-modeling mechanics agent-based-model angiogenesis cellular-mechanics collective-migration

Resources

Readme

License

GPL-3.0 license
Activity

Stars

1 star

Watchers

1 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

No packages published

Languages