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38 Open 20 Closed
38 Open 20 Closed
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Issues list

Run-time error: help needed
#87 opened Feb 16, 2023 by yufengwudcs
3
Trouble with options --max_reticulations and --brlen bug Something isn't working
#86 opened Jul 31, 2022 by max-hill
@lutteropp
2
Detailed Future Work Ideas
#85 opened Aug 20, 2021 by lutteropp
1
Noncritical bug in deciding how often to repeat nontopology optimization
#84 opened Aug 20, 2021 by lutteropp
Comparison with PhyLiNC, PhyloDAG, SNAQ, PhyloNET MPL, and PhyloNET ML on simulated data
#83 opened Aug 8, 2021 by lutteropp
34
Snakes Empirical Dataset
#82 opened Aug 8, 2021 by lutteropp
18
Simulated experiments for paper, result files
#81 opened Jun 22, 2021 by lutteropp
9
Idea for a fast, CLV-based network pseudolikelihood
#60 opened Apr 29, 2021 by lutteropp
5
Speed up ranking of candidates
#53 opened Apr 5, 2021 by lutteropp
2
Derivative of Network Loglikelihood for brlen optimization
#49 opened Mar 14, 2021 by lutteropp
44
Empirical dataset
#48 opened Feb 28, 2021 by lutteropp
5
A short observation about per-displayed-tree-clvs
#47 opened Feb 24, 2021 by lutteropp
10
New experimental setup
#46 opened Feb 17, 2021 by lutteropp
28
Unrooted softwired distance
#45 opened Feb 15, 2021 by lutteropp
9
[for later, just curious] Question about Branch Length Optimization
#43 opened Feb 10, 2021 by lutteropp
48
New experimental results
#42 opened Feb 4, 2021 by lutteropp
19
[for later, just curious] Question about Ancestral State Reconstruction
#41 opened Feb 4, 2021 by lutteropp
10
Should we exclude datasets where the simulated network has worse BIC than the raxml-ng best tree?
#40 opened Jan 17, 2021 by lutteropp
3
When and in which order optimize reticulation probs, branch lengths, and model parameters?
#37 opened Jan 11, 2021 by lutteropp
2
Implement Network Checkpointing
#35 opened Dec 17, 2020 by lutteropp
Can the current horizontal moves fix a badly placed reticulation?
#34 opened Dec 17, 2020 by lutteropp
8
Observation: The number of reticulations depends on the chosen brlen linkage mode (and maybe also on the likelihood model)
#33 opened Dec 17, 2020 by lutteropp
7
Parallelize NetRAX
#31 opened Dec 8, 2020 by lutteropp
1
Switch to Search in Waves
#30 opened Dec 8, 2020 by lutteropp
9
Effect of branch-length linkage on Network inference
#28 opened Dec 7, 2020 by lutteropp
2
ProTip! Follow long discussions with comments:>50.