Drug Interaction Middleware

Getting Started

These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. See deployment for notes on how to deploy the project on a live system.

Prerequisites

Before installing, download and install Docker, Prolog, python, pip, virtualenv and Node.js.

Running

Apache Jena Fuseki (Triple Store)

Run main container storage:

docker run --name fuseki-data -v /fuseki busybox

Run main container, supply port (3030, recommended), password and container store:

docker run -e ADMIN_PASSWORD=[Password] -d --name fuseki -p 3030:3030 --volumes-from fuseki-data stain/jena-fuseki

Navigate to http://localhost:3030, select Manage Datasets, and create three new (persistent) datasets: drugs, transitions and beliefs.

TMR reasoner

Clone this repository:

git clone https://github.com/consult-kcl/drug-interaction

Change into the backend directory:

cd backend

Clone the TMR repository:

git clone https://github.com/consult-kcl/tmr.git

Enter Prolog environment:

swipl

Load server:

?- consult('server.pl').

Start server on a given port (1234, recommended):

?- server(1234).

TMRWeb API

From within the backend folder, create a node virtual environment (within a python virtual environment), and activate it:

virtualenv env
. env/bin/activate
pip install nodeenv
nodeenv nenv
. nenv/bin/activate

Install dependencies:

cat requirements.txt | xargs npm install -g

Create an environment file:

touch .env
```server

Add the following information to this environment file using a text editor:

FUSEKI_PASSWORD="[Password]"

Where [Password] is the password you created for the triple store earlier.

Run server:

npm start

The server runs by default on port 3000.

## Usage

See [documentation](api/README.md).

## Running the tests

## Deployment

## Built With

## Contributing

Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct, and the process for submitting pull requests to us.

## Versioning

We use [SemVer](http://semver.org/) for versioning. For the versions available, see the [tags on this repository](https://github.com/martinchapman/nokia-health/tags).

## Authors

Produced as part of the [CONSULT project](https://consult.kcl.ac.uk/).

![CONSULT project](https://consult.kcl.ac.uk/wp-content/uploads/sites/214/2017/12/overview-consult-768x230.png "CONSULT project")

## License

This project is licensed under the MIT License - see the [LICENSE.md](LICENSE.md) file for details.

## Acknowledgments

*