Merge pull request #2 from mabulnaga/mabulnaga-patch-2

fix hardcoded dimension in applytransform
mabulnaga · Apr 11, 2024 · 452da7e · 452da7e
2 parents eab32d4 + b4ef2a9
commit 452da7e
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/Scripts/antsMultivariateTemplateConstruction2.sh b/Scripts/antsMultivariateTemplateConstruction2.sh
@@ -1081,8 +1081,8 @@ for (( i = 0; i < $NUMBEROFMODALITIES; i++ ))
             BASENAME=` echo ${IMGbase} | cut -d '.' -f 1 `
             COM="${OUTPUT_DIR}/initialCOM${i}_${j}_${IMGbase}"
             COMTRANSFORM="${OUTPUT_DIR}/initialCOM${i}_${j}_${BASENAME}.mat"
-            antsAI -d 3 --convergence 0 --verbose 1 -m Mattes[${TEMPLATES[$i]},${CURRENTIMAGESET[$j]},32,None] -o ${COMTRANSFORM} -t AlignCentersOfMass
-            antsApplyTransforms -d 3 -r ${TEMPLATES[$i]} -i ${CURRENTIMAGESET[$j]} -t ${COMTRANSFORM} -o ${COM} --verbose
+            antsAI -d ${DIM} --convergence 0 --verbose 1 -m Mattes[${TEMPLATES[$i]},${CURRENTIMAGESET[$j]},32,None] -o ${COMTRANSFORM} -t AlignCentersOfMass
+            antsApplyTransforms -d ${DIM} -r ${TEMPLATES[$i]} -i ${CURRENTIMAGESET[$j]} -t ${COMTRANSFORM} -o ${COM} --verbose
             rm -f $COMTRANSFORM
             IMAGECOMSET[${#IMAGECOMSET[@]}]=$COM
           done