In this experiment, we will compute pairwise distance using FMH, and then use the distance matrix to compute Phylogenetic tree.
Steps:
- Create folder for genomes
- Create a file : list of genomes. Line1: name, line2: folder path
- Write code that will Open all genomes Then, construct fmh sketches for a bunch of different seeds (1 - 100)
- After these, write code that will read genome list, seeds, and output pairwise distances using fmh
#Tree building method that takes into consideration uncertainties #Look into bootstrapping techniques