Skip to content

MashMap v3.0.6
Compare
Choose a tag to compare
@bkille bkille released this 10 Jul 18:14
· 39 commits to master since this release
v3.0.6
4f4df5d
This commit was created on github.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Changelog:

  • Uses the chaining algorithm from wfmash
  • --splitPrefix now performs the filtering on each prefix-group independently.
  • Does not sketch or winnow k-mers w/ ambiguous nucleotides.
  • Added kc:f tag for the estimated k-mer complexity, defined as the ratio of the estimated number of distinct k-mers in a segment to the total number of k-mers in a segment (this estimate can be greater than 1.0).
  • Added a flag --kmerComplexity x to filter out segments with estimated kmer complexity less than x.
  • Mapping progress now updates for each segment mapped, as opposed to each contig mapped.
  • Added --reportPercentage option to report ANI as a percentage instead of in [0, 1] range (necessary for use w/ wfmash)
  • Fixes #54
  • Does not split sequences smaller than the block length.
  • Added address sanitizer for Debug build
Assets 2
Loading