Skip to content

Issues: marcelm/cutadapt

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

75 Open 659 Closed
75 Open 659 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Warn if adapters cannot be indexed
#823 opened Dec 5, 2024 by marcelm
Feature request: control info-file column separator
#816 opened Nov 6, 2024 by ramongallego
5
I have 5' and 3' adapter sequences for the paired read sequencing data? how should I remove them
#813 opened Oct 14, 2024 by sayeraselvan
14
Trimming reads generated by the template switching RT
#810 opened Sep 24, 2024 by Ahram-Ahn
1
[Question] linked adapters from Fasta file and discarding untrimmed pairs
#806 opened Sep 6, 2024 by marchoeppner
1
Suggestion: filter mode for polyA
#805 opened Aug 29, 2024 by NickNCL
2
Unable to trim primers from my interleaved fastq files
#800 opened Aug 16, 2024 by kdbchau
4
Should I use -a or -g when demultiplexing ONT reads with dual barcodes?
#799 opened Aug 9, 2024 by ashleyp1
3
Primer sequence trimming. Cutadapt does not cut all of them
#798 opened Aug 8, 2024 by Guillermouceda
1
Heterogeneity Spacers and Primers
#792 opened Jul 2, 2024 by luigallucci
5
Adapter matches in the middle of a read masked with N
#787 opened May 21, 2024 by hmutpw
2
cutadapt: error: cutadapt not able to trim the desired adapto
#785 opened May 11, 2024 by faizee-ali
3
"OverflowError: FASTA/FASTQ record does not fit into buffer" when trimming ONT reads
#783 opened May 1, 2024 by diego-rt
7
Remove the "Incomplete adapter sequence" warning
#780 opened Apr 23, 2024 by marcelm
Ensuring to find the correct file after Demultiplexing my 16S amplicon raw dataset with combinatorial dual indexes cutadapt command
#776 opened Apr 16, 2024 by JayalalKJ
5
Feature request: Support for multiple FastQ pairs
#775 opened Mar 27, 2024 by Redmar-van-den-Berg
Vectorize alignment algorithm for x86-64
#768 opened Mar 15, 2024 by rhpvorderman
1
Output of demultiplexing mixed oriented reads
#764 opened Mar 1, 2024 by luigallucci
5
When demultiplexing, report contains irrelevant line
#760 opened Feb 2, 2024 by marcelm
feature request: ubam support?
#757 opened Jan 25, 2024 by eboyden
5
sc/snATAC-seq barcode correction
#754 opened Jan 10, 2024 by sknaack
5
poly-A trimming for paired-end data - consider orientation
#753 opened Jan 5, 2024 by benemead
2
Question about the paired-end read trimming.
#751 opened Jan 3, 2024 by chaibenl
1
Feature request: ONT Chimeric read splitting
#747 opened Dec 12, 2023 by rhpvorderman
4
Small ONT optimization: length filtering before applying trimming
#743 opened Nov 29, 2023 by rhpvorderman
1
ProTip! Updated in the last three days: updated:>2024-12-13.