GitHub - massyah/GRN-analysis

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
Th17 differentiation		Th17 differentiation
ginsimModels		ginsimModels
spikes		spikes
atlas_interactions.py		atlas_interactions.py
bow_statistics.py		bow_statistics.py
download_full_text.py		download_full_text.py
extractNodePos.py		extractNodePos.py
full_text_search.py		full_text_search.py
fuse_tables.py		fuse_tables.py
gensim_test.py		gensim_test.py
index_full_text.py		index_full_text.py
interaction_detection.py		interaction_detection.py
miner.py		miner.py
miner.tmproj		miner.tmproj
n_grams.py		n_grams.py
n_grams_analyze.py		n_grams_analyze.py
newTextFile.txt		newTextFile.txt
omg_interface.py		omg_interface.py
parameter_inference.py		parameter_inference.py
pubmed_get.py		pubmed_get.py
readme		readme
reg_graphs.py		reg_graphs.py
tgfb_rorgt_il_1 logical model 0001.graffle		tgfb_rorgt_il_1 logical model 0001.graffle
th17.py		th17.py
th17_experimental_results.py		th17_experimental_results.py
th17_model.py		th17_model.py

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Proof of concept for gene regulatory network analysis of Th17 differentiation. Based on the gensim simulator, perform computation of accessible states using static analysis and fast partial matrix multiplication.