Merge branch 'master' into consistent-ruff

.github/workflows/test.yml

@@ -9,17 +9,17 @@ jobs:
       max-parallel: 20
       matrix:
         os: [ubuntu-latest, macos-14, windows-latest]
-        python-version: ["3.9", "3.12"]
+        python-version: ["3.10", "3.12"]
 
     runs-on: ${{ matrix.os }}
 
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python ${{ matrix.python-version }}
+      - name: Set up Python ${{ matrix.python }}
         uses: actions/setup-python@v5
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: ${{ matrix.python }}
 
       - name: Install dependencies
         run: |
@@ -30,6 +30,6 @@ jobs:
         run: pytest --cov=monty --cov-report html:coverage_reports tests
 
       - name: Upload coverage reports to Codecov
-        uses: codecov/codecov-action@v3
+        uses: codecov/codecov-action@v4
         env:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

.pre-commit-config.yaml

@@ -8,7 +8,7 @@ ci:
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.9
+    rev: v0.8.1
     hooks:
       - id: ruff
         args: [--fix]
@@ -24,7 +24,7 @@ repos:
         exclude: ^tests
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.11.2
+    rev: v1.13.0
     hooks:
       - id: mypy
 
@@ -37,19 +37,19 @@ repos:
         additional_dependencies: [tomli] # needed to read pyproject.toml below py3.11
 
   - repo: https://github.com/MarcoGorelli/cython-lint
-    rev: v0.16.2
+    rev: v0.16.6
     hooks:
       - id: cython-lint
         args: [--no-pycodestyle]
       - id: double-quote-cython-strings
 
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: 1.19.0
+    rev: 1.19.1
     hooks:
       - id: blacken-docs
 
   - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.42.0
+    rev: v0.43.0
     hooks:
       - id: markdownlint
         # MD013: line too long

README.md

@@ -24,6 +24,6 @@ Monty is created to serve as a complement to the Python standard library. It
 provides suite of tools to solve many common problems, and hopefully,
 be a resource to collect the best solutions.
 
-Monty supports Python 3.x.
+Monty supports Python 3.10+.
 
 Please visit the [official docs](https://materialsvirtuallab.github.io/monty) for more information.

docs/Gemfile.lock

@@ -224,8 +224,7 @@ GEM
     rb-fsevent (0.11.2)
     rb-inotify (0.10.1)
       ffi (~> 1.0)
-    rexml (3.3.6)
-      strscan
+    rexml (3.3.9)
     rouge (3.26.0)
     ruby2_keywords (0.0.5)
     rubyzip (2.3.2)
@@ -240,7 +239,6 @@ GEM
       faraday (>= 0.17.3, < 3)
     simpleidn (0.2.1)
       unf (~> 0.1.4)
-    strscan (3.1.0)
     terminal-table (1.8.0)
       unicode-display_width (~> 1.1, >= 1.1.1)
     typhoeus (1.4.0)

pylintrc

@@ -80,7 +80,7 @@ persistent=yes
 
 # Minimum Python version to use for version dependent checks. Will default to
 # the version used to run pylint.
-py-version=3.9
+py-version=3.10
 
 # Discover python modules and packages in the file system subtree.
 recursive=no

pyproject.toml

@@ -9,7 +9,7 @@ maintainers = [
 ]
 description = "Monty is the missing complement to Python."
 readme = "README.md"
-requires-python = ">=3.9"
+requires-python = ">=3.10"
 classifiers = [
     "Programming Language :: Python :: 3",
     "Development Status :: 4 - Beta",
@@ -20,7 +20,7 @@ classifiers = [
 ]
 dependencies = [
   "ruamel.yaml",
-  "numpy<2.0.0",
+  "numpy",
 ]
 version = "2024.10.21"
 
@@ -31,6 +31,7 @@ ci = [
   "pytest>=8",
   "pytest-cov>=4",
   "types-requests",
+  "pymongo"
 ]
 # dev is for "dev" module, not for development
 dev = ["ipython"]
@@ -39,12 +40,14 @@ docs = [
     "sphinx_rtd_theme",
 ]
 json = [
-  "bson",
+  "pymongo",
   "orjson>=3.6.1",
   "pandas",
   "pydantic",
-  "pint",
-  "torch",
+  # https://github.com/hgrecco/pint/issues/2065
+  "pint; python_version<'3.13'",
+  # Note: need torch>=2.3.0 for numpy 2 # 719
+  "torch; python_version<'3.13'",  # python 3.13 not supported yet
 ]
 multiprocessing = ["tqdm"]
 optional = ["monty[dev,json,multiprocessing,serialization]"]
@@ -57,10 +60,9 @@ include = ["monty", "monty.*"]
 
 [tool.black]
 line-length = 120
-target-version = ['py39']
+target-version = ["py310"]
 include = '\.pyi?$'
 exclude = '''
-
 (
   /(
       \.eggs         # exclude a few common directories in the
@@ -85,26 +87,24 @@ branch = true
 exclude_also = [
     "@deprecated",
     "def __repr__",
-    "if 0:",
-    "if __name__ == .__main__.:",
     "if self.debug:",
     "if settings.DEBUG",
     "pragma: no cover",
     "raise AssertionError",
     "raise NotImplementedError",
     "show_plot",
     "if TYPE_CHECKING:",
-    "if typing.TYPE_CHECKING:",
     "except ImportError:"
 ]
 
 [tool.mypy]
 ignore_missing_imports = true
 
-[tool.ruff]
-lint.select = [
-  "I",  #isort
+[tool.ruff.lint]
+select = [
+  "I",  # isort
 ]
 
-lint.isort.required-imports = ["from __future__ import annotations"]
-lint.isort.known-first-party = ["monty"]
+[tool.ruff.lint.isort]
+required-imports = ["from __future__ import annotations"]
+known-first-party = ["monty"]