- protein G Correcting folding pathway of Protein G by integrative modeling with Markov state model
- myosin V Hidden Markov Modeling of Myosin V Walking on Actin Filament using High-Speed Atomic Force Microscopy Data
- capsid Explicit description of viral capsid subunit shapes by expanding dihedrons
- differentiable_BTR End-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images
- paper_mbar Use of multistate Bennett acceptance ratio method for free-energy calculations from enhanced sampling and free-energy perturbation
- paper_ogane2022 Development of hidden Markov modeling method for molecular orientations and structure estimation from high-speed atomic force microscopy time-series images
- paper_higashida2021 Enhanced Conformational Sampling of Nanobody CDR H3 Loop by Generalized Replica-Exchange with Solute Tempering
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