thomasmanke is testing #3
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name: Rintro2HTML | |
run-name: ${{ github.actor }} is testing | |
on: | |
push: | |
branches: ["2024.04"] | |
jobs: | |
build: | |
name: Conda Tests | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
container: node:latest | |
steps: | |
- name: Print shell information | |
run: | | |
echo "Shell: $SHELL" | |
echo "Shell version: $($SHELL --version)" | |
uname -a || true | |
- uses: actions/checkout@v2 | |
- name: Check yaml | |
run: | | |
cat configs/conda.yml || true | |
- name: Install Conda environment with Micromamba | |
uses: mamba-org/setup-micromamba@main | |
with: | |
environment-file: configs/conda.yml | |
- name: List Available Environment | |
shell: bash -l {0} | |
run: micromamba list | |
- name: Activate Environment | |
run: micromamba activate Rintro | |
- name: Check Installation | |
run: | | |
echo "after conda activate Rintro: PATH=$PATH;" | |
which R || true | |
R --version || true | |
- name: Installation non-conda packages | |
run: | | |
Rscript -e 'install.packages("dslabs", repos="https://cloud.r-project.org")' | |
- name: Inspect dslabs ext_data | |
run: | | |
Rscript -e 'list.files(system.file(package="dslabs"))' | |
- name: Inspect dslabs ext_data again | |
run: | | |
Rscript -e 'list.files(system.file("extdata", package="dslabs"))' | |
- name: Render quarto | |
#continue-on-error: true. # only for error tracking | |
run: quarto render | |
- name: Show all files | |
run: ls -Ral | |
- name: Upload | |
uses: actions/upload-pages-artifact@v3 | |
with: | |
path: ./docs | |
deploy: | |
needs: build | |
environment: | |
name: github-pages | |
url: ${{ steps.deployment.outputs.page_url }} | |
runs-on: ubuntu-latest | |
steps: | |
- name: Deploy to GitHub Pages | |
id: deployment | |
uses: actions/deploy-pages@v4 | |