thomasmanke is testing #46

	name: Rintro2HTML
	run-name: ${{ github.actor }} is testing

	on:
	push:
	branches: ["thomas"]

	jobs:

	build:
	name: Conda Tests
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	container: node:latest

	steps:
	- name: Print shell information
	run: \|
	echo "Shell: $SHELL"
	echo "Shell version: $($SHELL --version)"
	uname -a \|\| true

	- uses: actions/checkout@v4
	- name: Check yaml
	run: \|
	cat configs/conda.yml \|\| true

	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@main
	with:
	environment-file: configs/conda.yml

	- name: List Available Environment
	shell: bash -l {0}
	run: micromamba list

	- name: Activate Environment
	run: micromamba activate Rintro

	- name: Check Installation
	run: \|
	echo "after conda activate Rintro: PATH=$PATH;"
	which R \|\| true
	R --version \|\| true

	- name: Installation non-conda packages
	run: \|
	Rscript -e 'install.packages(c("KernSmooth"), repos="https://cloud.r-project.org")'

	- name: Inspect .libPaths
	run: \|
	Rscript -e '.libPaths()'

	- name: Set up Quarto
	uses: quarto-dev/quarto-actions/setup@v2

	- name: Check Quarto
	run: \|
	which micromamba
	micromamba --version
	which R
	R --version
	which quarto
	quarto --version
	ls -alR

	- name: Render and Publish
	uses: quarto-dev/quarto-actions/publish@v2
	with:
	target: gh-pages
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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