thomasmanke is testing #49
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Rintro2HTML | |
| run-name: ${{ github.actor }} is testing | |
| on: | |
| push: | |
| branches: ["thomas"] | |
| jobs: | |
| build: | |
| name: Conda Tests | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| # container: node:latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: configs/conda.yml | |
| - name: Activate Environment | |
| run: micromamba activate Rintro | |
| - name: Check Installation | |
| run: | | |
| echo "after conda activate Rintro: PATH=$PATH;" | |
| which R || true | |
| R --version || true | |
| which micromamba || true | |
| micromamba --version || true | |
| which quarto || true | |
| quarto --version || true | |
| - name: Installation non-conda packages | |
| run: | | |
| Rscript -e 'install.packages(c("KernSmooth"), repos="https://cloud.r-project.org")' | |
| Rscript -e '.libPaths()' || true | |
| - name: Render quarto | |
| #continue-on-error: true # only for error tracking | |
| run: | | |
| quarto render . | |
| - name: Show all files in docs | |
| run: ls -Ral docs | |
| - name: Show file contents | |
| run: | | |
| cat docs/index.html | |
| - name: Upload | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: ./docs | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ !env.ACT }} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: | | |
| ./docs | |
| # the following does not work; micromamba env and installs seem not to be recoginized | |
| # see also: https://github.com/quarto-dev/quarto-actions/issues/47 | |
| # - name: Set up Quarto | |
| # uses: quarto-dev/quarto-actions/setup@v2 | |
| # - name: Render and Publish | |
| # uses: quarto-dev/quarto-actions/publish@v2 | |
| # with: | |
| # target: gh-pages | |
| # env: | |
| # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |