thomasmanke is testing #50
Workflow file for this run
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| name: Rintro2HTML | |
| run-name: ${{ github.actor }} is testing | |
| on: | |
| push: | |
| branches: ["thomas"] | |
| jobs: | |
| build: | |
| name: Conda Tests | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| # container: node:latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: configs/conda.yml | |
| - name: Activate Environment | |
| run: micromamba activate Rintro | |
| - name: Check Installation | |
| run: | | |
| echo "after conda activate Rintro: PATH=$PATH;" | |
| which R || true | |
| R --version || true | |
| which micromamba || true | |
| micromamba --version || true | |
| which quarto || true | |
| quarto --version || true | |
| - name: Installation non-conda packages | |
| run: | | |
| Rscript -e 'install.packages(c("KernSmooth"), repos="https://cloud.r-project.org")' | |
| Rscript -e '.libPaths()' || true | |
| - name: Render quarto | |
| #continue-on-error: true # only for error tracking | |
| run: | | |
| quarto render . | |
| - name: Show all files in docs | |
| run: ls -Ral docs | |
| - name: Show file contents | |
| run: | | |
| cat docs/index.html | |
| - name: Upload | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: ./docs | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ !env.ACT }} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: | | |
| ./docs | |
| # the following does not work; micromamba env and installs seem not to be recoginized | |
| # see also: https://github.com/quarto-dev/quarto-actions/issues/47 | |
| # - name: Set up Quarto | |
| # uses: quarto-dev/quarto-actions/setup@v2 | |
| # - name: Render and Publish | |
| # uses: quarto-dev/quarto-actions/publish@v2 | |
| # with: | |
| # target: gh-pages | |
| # env: | |
| # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |