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thomasmanke is testing #66

thomasmanke is testing

thomasmanke is testing #66

Workflow file for this run

name: Rintro2HTML
run-name: ${{ github.actor }} is testing
on:
push:
branches: ["2024.04"]
permissions:
contents: read
pages: write
id-token: write
defaults:
run:
shell: bash -l {0}
jobs:
build:
name: Build Pages
runs-on: ubuntu-latest
# container: node:latest
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Install Conda environment with Micromamba
uses: mamba-org/setup-micromamba@main
with:
environment-file: configs/conda.yml
environment-name: Rintro
# caching seems to slow down jobs
# cache-environment: true
# cache-downloads: true
- name: Activate Environment
run: micromamba activate Rintro
- name: Check Installation
run: |
echo "after conda activate Rintro: PATH=$PATH;"
which R || true
R --version || true
which micromamba || true
micromamba --version || true
which quarto || true
quarto --version || true
- name: Installation non-conda packages
run: |
Rscript -e 'install.packages(c("KernSmooth"), repos="https://cloud.r-project.org")'
Rscript -e '.libPaths()' || true
- name: Render quarto
#continue-on-error: true # only for error tracking
run: |
quarto render .
- name: Show all files in docs
run: ls -Ral docs
- name: Show file contents
run: |
cat docs/index.html
- name: Upload
uses: actions/upload-pages-artifact@v3
with:
path: ./docs
# - name: Deploy to GitHub Pages
# uses: peaceiris/actions-gh-pages@v3
# if: ${{ !env.ACT }}
# with:
# github_token: ${{ secrets.GITHUB_TOKEN }}
# publish_dir: |
# ./docs
deploy:
needs: build
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
runs-on: ubuntu-latest
steps:
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v4
# the following does not work; micromamba env and installs seem not to be recognized
# see also: https://github.com/quarto-dev/quarto-actions/issues/47
# - name: Set up Quarto
# uses: quarto-dev/quarto-actions/setup@v2
# - name: Render and Publish
# uses: quarto-dev/quarto-actions/publish@v2
# with:
# target: gh-pages
# env:
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}