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  1. motifgp motifgp Public

    Motif discovery for DNA sequences using multiobjective optimization and genetic programming.

    Python 6

  2. PavlidisLab/aspiredb PavlidisLab/aspiredb Public

    ASPIREdb is a web-based software system for the analysis of genomic variants (CNVs, SNVs, and Indels) and phenotypes. Potential users include researchers who are trying to understand the relationsh…

    JavaScript 4

  3. moea-automatic-termination moea-automatic-termination Public

    Implementation of the MOEA Entropy based automatic termination algorithm (Saxena et al. 2016)

    Python 2 1

  4. PavlidisLab/rnaseq-pipeline PavlidisLab/rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    Python 22 4

  5. moead-py moead-py Public

    A Python implementation of the decomposition based multi-objective evolutionary algorithm (MOEA/D)

    Python 76 27

  6. PavlidisLab/RSEM PavlidisLab/RSEM Public

    Forked from deweylab/RSEM

    RSEM with STAR shared memory support (fork from RSEM: accurate quantification of gene and isoform expression from RNA-Seq data)

    C++ 1