Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Move Namespace to MII #16

Merged
merged 2 commits into from
Jun 2, 2022
Merged

Move Namespace to MII #16

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
ff18e16
change netzwerk-universitaetsmedizin to medizinformatik-initiative
wetret May 31, 2022
3f3e412
also rename name attribute
wetret May 31, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 10 additions & 0 deletions .gitignore
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,16 @@
/feasibility-dsf-process-docker-test-setup/dic-2/fhir/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-2/fhir/log/*.log.gz

/feasibility-dsf-process-docker-test-setup/dic-3/bpe/last_event/time.file
/feasibility-dsf-process-docker-test-setup/dic-3/bpe/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-3/bpe/log/*.log.gz
/feasibility-dsf-process-docker-test-setup/dic-3/bpe/plugin/*.jar
/feasibility-dsf-process-docker-test-setup/dic-3/bpe/process/*.jar
/feasibility-dsf-process-docker-test-setup/dic-3/fhir/conf/bundle.xml
/feasibility-dsf-process-docker-test-setup/dic-3/fhir/conf/config.properties
/feasibility-dsf-process-docker-test-setup/dic-3/fhir/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-3/fhir/log/*.log.gz

/feasibility-dsf-process-docker-test-setup/zars/bpe/last_event/time.file
/feasibility-dsf-process-docker-test-setup/zars/bpe/log/*.log
/feasibility-dsf-process-docker-test-setup/zars/bpe/log/*.log.gz
Expand Down
2 changes: 1 addition & 1 deletion LICENSE
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -187,7 +187,7 @@
same "printed page" as the copyright notice for easier
identification within third-party archives.

Copyright 2021 Netzwerk Universitätsmedizin
Copyright 2021 Medizininformatik Initiative

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
Expand Down
10 changes: 5 additions & 5 deletions feasibility-dsf-process-docker-test-setup/data/feasibility-bundle.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,10 +8,10 @@
"resourceType": "Task",
"meta": {
"profile": [
"https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/codex-task-request-simple-feasibility"
"http://medizininformatik-initiative.de/fhir/StructureDefinition/codex-task-request-simple-feasibility"
]
},
"instantiatesUri": "http://www.netzwerk-universitaetsmedizin.de/bpe/Process/requestSimpleFeasibility/0.2.0",
"instantiatesUri": "http://medizininformatik-initiative.de/bpe/Process/requestSimpleFeasibility/0.2.0",
"status": "requested",
"intent": "order",
"authoredOn": "2021",
Expand Down Expand Up @@ -60,7 +60,7 @@
"type": {
"coding": [
{
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/feasibility",
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/feasibility",
"code": "measure-reference"
}
]
Expand Down Expand Up @@ -88,7 +88,7 @@
}
],
"profile": [
"https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/codex-measure"
"http://medizininformatik-initiative.de/fhir/StructureDefinition/codex-measure"
]
},
"url": "https://zars/Measure/7a142223-616f-41a1-97da-2ae726031b71",
Expand Down Expand Up @@ -142,7 +142,7 @@
}
],
"profile": [
"https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/codex-library"
"http://medizininformatik-initiative.de/fhir/StructureDefinition/codex-library"
]
},
"url": "urn:uuid:30561ba6-106f-4d52-bb8d-e49e20a40d40",
Expand Down
24 changes: 12 additions & 12 deletions feasibility-dsf-process-docker-test-setup/dic-1/flare/feasibility-code-tree.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17857,71 +17857,71 @@
"termCode": {
"code": "1",
"display": "Very Fit",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "2",
"display": "Well",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "3",
"display": "Managing Well",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "4",
"display": "Vulnerable",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "5",
"display": "Mildly Frail",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "6",
"display": "Moderately Frail",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "7",
"display": "Severely Frail",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "8",
"display": "Very Severely Frail",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
"children": [],
"termCode": {
"code": "9",
"display": "Terminally Ill",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/frailty-score"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/frailty-score"
}
},
{
Expand Down Expand Up @@ -23075,15 +23075,15 @@
"termCode": {
"code": "02",
"display": "Study enrolment due to Covid-19",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/ecrf-parameter-codes"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/ecrf-parameter-codes"
}
},
{
"children": [],
"termCode": {
"code": "03",
"display": "Interventional studies participation",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/ecrf-parameter-codes"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/ecrf-parameter-codes"
}
}
],
Expand Down Expand Up @@ -23574,7 +23574,7 @@
"termCode": {
"code": "06",
"display": "SOFA-Score",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/ecrf-parameter-codes"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/ecrf-parameter-codes"
}
},
{
Expand Down
6 changes: 3 additions & 3 deletions feasibility-dsf-process-docker-test-setup/dic-1/flare/feasibility-mapping.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -28258,7 +28258,7 @@
"key": {
"code": "02",
"display": "Study enrolment due to Covid-19",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/ecrf-parameter-codes"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/ecrf-parameter-codes"
},
"termCodeSearchParameter": "code",
"valueSearchParameter": "value-concept"
Expand Down Expand Up @@ -31464,7 +31464,7 @@
"key": {
"code": "03",
"display": "Interventional studies participation",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/ecrf-parameter-codes"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/ecrf-parameter-codes"
},
"termCodeSearchParameter": "code",
"valueSearchParameter": "value-concept"
Expand Down Expand Up @@ -52883,7 +52883,7 @@
"key": {
"code": "06",
"display": "SOFA-Score",
"system": "https://www.netzwerk-universitaetsmedizin.de/fhir/CodeSystem/ecrf-parameter-codes"
"system": "http://medizininformatik-initiative.de/fhir/CodeSystem/ecrf-parameter-codes"
},
"termCodeSearchParameter": "code",
"valueSearchParameter": "value-quantity"
Expand Down
10 changes: 5 additions & 5 deletions ...lity-dsf-process-test-data-generator/src/main/resources/bundle-templates/dic-1-bundle.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -174,17 +174,17 @@
</meta>
<identifier>
<system value="http://highmed.org/sid/organization-identifier"/>
<value value="netzwerk-universitaetsmedizin.de"/>
<value value="medizininformatik-initiative.de"/>
</identifier>
<active value="true"/>
<name value="Netzwerk Universitätsmedizin"/>
<name value="Medizininformatik Initiative"/>
</Organization>
</resource>
<request>
<method value="POST"/>
<url value="Organization"/>
<ifNoneExist
value="identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de"/>
value="identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de"/>
</request>
</entry>

Expand Down Expand Up @@ -224,7 +224,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
</request>
</entry>

Expand Down Expand Up @@ -264,7 +264,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_1"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_1"/>
</request>
</entry>
</Bundle>
10 changes: 5 additions & 5 deletions ...lity-dsf-process-test-data-generator/src/main/resources/bundle-templates/dic-2-bundle.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -176,17 +176,17 @@
</meta>
<identifier>
<system value="http://highmed.org/sid/organization-identifier"/>
<value value="netzwerk-universitaetsmedizin.de"/>
<value value="medizininformatik-initiative.de"/>
</identifier>
<active value="true"/>
<name value="Netzwerk Universitätsmedizin"/>
<name value="Medizininformatik Initiative"/>
</Organization>
</resource>
<request>
<method value="POST"/>
<url value="Organization"/>
<ifNoneExist
value="identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de"/>
value="identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de"/>
</request>
</entry>

Expand Down Expand Up @@ -226,7 +226,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
</request>
</entry>

Expand Down Expand Up @@ -266,7 +266,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_2"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_2"/>
</request>
</entry>
</Bundle>
10 changes: 5 additions & 5 deletions ...lity-dsf-process-test-data-generator/src/main/resources/bundle-templates/dic-3-bundle.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -176,17 +176,17 @@
</meta>
<identifier>
<system value="http://highmed.org/sid/organization-identifier"/>
<value value="netzwerk-universitaetsmedizin.de"/>
<value value="medizininformatik-initiative.de"/>
</identifier>
<active value="true"/>
<name value="Netzwerk Universitätsmedizin"/>
<name value="Medizininformatik Initiative"/>
</Organization>
</resource>
<request>
<method value="POST"/>
<url value="Organization"/>
<ifNoneExist
value="identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de"/>
value="identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de"/>
</request>
</entry>

Expand Down Expand Up @@ -226,7 +226,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
</request>
</entry>

Expand Down Expand Up @@ -266,7 +266,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_3"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_3"/>
</request>
</entry>
</Bundle>
14 changes: 7 additions & 7 deletions ...ility-dsf-process-test-data-generator/src/main/resources/bundle-templates/zars-bundle.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -338,17 +338,17 @@
</meta>
<identifier>
<system value="http://highmed.org/sid/organization-identifier"/>
<value value="netzwerk-universitaetsmedizin.de"/>
<value value="medizininformatik-initiative.de"/>
</identifier>
<active value="true"/>
<name value="Netzwerk Universitätsmedizin"/>
<name value="Medizininformatik Initiative"/>
</Organization>
</resource>
<request>
<method value="POST"/>
<url value="Organization"/>
<ifNoneExist
value="identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de"/>
value="identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de"/>
</request>
</entry>
<entry>
Expand Down Expand Up @@ -387,7 +387,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_ZARS"/>
</request>
</entry>

Expand Down Expand Up @@ -427,7 +427,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_1"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_1"/>
</request>
</entry>

Expand Down Expand Up @@ -467,7 +467,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_2"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_2"/>
</request>
</entry>

Expand Down Expand Up @@ -507,7 +507,7 @@
<method value="POST"/>
<url value="OrganizationAffiliation"/>
<ifNoneExist
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|netzwerk-universitaetsmedizin.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_3"/>
value="primary-organization:identifier=http://highmed.org/sid/organization-identifier|medizininformatik-initiative.de&amp;participating-organization:identifier=http://highmed.org/sid/organization-identifier|Test_DIC_3"/>
</request>
</entry>
</Bundle>
6 changes: 3 additions & 3 deletions ...izininformatik_initiative/feasibility_dsf_process/FeasibilityProcessPluginDefinition.java
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ public class FeasibilityProcessPluginDefinition implements ProcessPluginDefiniti

@Override
public String getName() {
return "feasibility-dsf-process";
return "mii-process-feasibility";
}

@Override
Expand Down Expand Up @@ -75,9 +75,9 @@ public ResourceProvider getResourceProvider(FhirContext fhirContext, ClassLoader
var vF = ValueSetResource.file("fhir/ValueSet/feasibility.xml");

Map<String, List<AbstractResource>> resourcesByProcessKeyAndVersion = Map.of(
"wwwnetzwerk-universitaetsmedizinde_executeSimpleFeasibility/" + VERSION,
"medizininformatik-initiativede_executeSimpleFeasibility/" + VERSION,
Arrays.asList(aExe, sTExe, sTResS, vF, cF, sMeasure, sMeasureReport, sLibrary),
"wwwnetzwerk-universitaetsmedizinde_requestSimpleFeasibility/" + VERSION,
"medizininformatik-initiativede_requestSimpleFeasibility/" + VERSION,
Arrays.asList(aReq, sTReq, sExtDic, vF, cF, sMeasure, sMeasureReport, sLibrary));

return ResourceProvider.read(VERSION,
Expand Down
Loading