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Update to DSF Version 0.9.0 #29

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Oct 21, 2022
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4 changes: 0 additions & 4 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,6 @@
/feasibility-dsf-process-docker-test-setup/secrets/*.pem
/feasibility-dsf-process-docker-test-setup/secrets/*.p12

/feasibility-dsf-process-docker-test-setup/dic-1/bpe/last_event/time.file
/feasibility-dsf-process-docker-test-setup/dic-1/bpe/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-1/bpe/log/*.log.gz
/feasibility-dsf-process-docker-test-setup/dic-1/bpe/plugin/*.jar
Expand All @@ -18,7 +17,6 @@
/feasibility-dsf-process-docker-test-setup/dic-1/fhir/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-1/fhir/log/*.log.gz

/feasibility-dsf-process-docker-test-setup/dic-2/bpe/last_event/time.file
/feasibility-dsf-process-docker-test-setup/dic-2/bpe/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-2/bpe/log/*.log.gz
/feasibility-dsf-process-docker-test-setup/dic-2/bpe/plugin/*.jar
Expand All @@ -28,7 +26,6 @@
/feasibility-dsf-process-docker-test-setup/dic-2/fhir/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-2/fhir/log/*.log.gz

/feasibility-dsf-process-docker-test-setup/dic-3/bpe/last_event/time.file
/feasibility-dsf-process-docker-test-setup/dic-3/bpe/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-3/bpe/log/*.log.gz
/feasibility-dsf-process-docker-test-setup/dic-3/bpe/plugin/*.jar
Expand All @@ -38,7 +35,6 @@
/feasibility-dsf-process-docker-test-setup/dic-3/fhir/log/*.log
/feasibility-dsf-process-docker-test-setup/dic-3/fhir/log/*.log.gz

/feasibility-dsf-process-docker-test-setup/zars/bpe/last_event/time.file
/feasibility-dsf-process-docker-test-setup/zars/bpe/log/*.log
/feasibility-dsf-process-docker-test-setup/zars/bpe/log/*.log.gz
/feasibility-dsf-process-docker-test-setup/zars/bpe/plugin/*.jar
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28 changes: 8 additions & 20 deletions feasibility-dsf-process-docker-test-setup/docker-compose.yml
Original file line number Diff line number Diff line change
Expand Up @@ -73,7 +73,7 @@ services:

# ---- ZARS - FHIR Inbox ----------------------------------------------------
zars-fhir-app:
image: ghcr.io/highmed/fhir:0.7.0
image: ghcr.io/highmed/fhir:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_fhir.jar", "org.highmed.dsf.fhir.StatusClient" ]
Expand Down Expand Up @@ -124,7 +124,7 @@ services:

# ---- ZARS - BPE -----------------------------------------------------------
zars-bpe-app:
image: ghcr.io/highmed/bpe:0.7.0
image: ghcr.io/highmed/bpe:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_bpe.jar", "org.highmed.dsf.bpe.StatusClient" ]
Expand All @@ -151,9 +151,6 @@ services:
- type: bind
source: ./zars/bpe/log
target: /opt/bpe/log
- type: bind
source: ./zars/bpe/last_event
target: /opt/bpe/last_event
- type: bind
source: ./zars/bpe/cache
target: /opt/bpe/cache
Expand Down Expand Up @@ -183,7 +180,7 @@ services:

# ---- DIC-1 - FHIR ---------------------------------------------------------
dic-1-fhir-app:
image: ghcr.io/highmed/fhir:0.7.0
image: ghcr.io/highmed/fhir:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_fhir.jar", "org.highmed.dsf.fhir.StatusClient" ]
Expand Down Expand Up @@ -234,7 +231,7 @@ services:

# ---- DIC-1 - BPE ----------------------------------------------------------
dic-1-bpe-app:
image: ghcr.io/highmed/bpe:0.7.0
image: ghcr.io/highmed/bpe:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_bpe.jar", "org.highmed.dsf.bpe.StatusClient" ]
Expand All @@ -261,9 +258,6 @@ services:
- type: bind
source: ./dic-1/bpe/log
target: /opt/bpe/log
- type: bind
source: ./dic-1/bpe/last_event
target: /opt/bpe/last_event
- type: bind
source: ./dic-1/bpe/cache
target: /opt/bpe/cache
Expand Down Expand Up @@ -345,7 +339,7 @@ services:

# ---- DIC-2 - FHIR ---------------------------------------------------------
dic-2-fhir-app:
image: ghcr.io/highmed/fhir:0.7.0
image: ghcr.io/highmed/fhir:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_fhir.jar", "org.highmed.dsf.fhir.StatusClient" ]
Expand Down Expand Up @@ -396,7 +390,7 @@ services:

# ---- DIC-2 - BPE ----------------------------------------------------------
dic-2-bpe-app:
image: ghcr.io/highmed/bpe:0.7.0
image: ghcr.io/highmed/bpe:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_bpe.jar", "org.highmed.dsf.bpe.StatusClient" ]
Expand All @@ -423,9 +417,6 @@ services:
- type: bind
source: ./dic-2/bpe/log
target: /opt/bpe/log
- type: bind
source: ./dic-2/bpe/last_event
target: /opt/bpe/last_event
- type: bind
source: ./dic-2/bpe/cache
target: /opt/bpe/cache
Expand Down Expand Up @@ -477,7 +468,7 @@ services:

# ---- DIC-3 - FHIR ---------------------------------------------------------
dic-3-fhir-app:
image: ghcr.io/highmed/fhir:0.7.0
image: ghcr.io/highmed/fhir:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_fhir.jar", "org.highmed.dsf.fhir.StatusClient" ]
Expand Down Expand Up @@ -528,7 +519,7 @@ services:

# ---- DIC-3 - BPE ----------------------------------------------------------
dic-3-bpe-app:
image: ghcr.io/highmed/bpe:0.7.0
image: ghcr.io/highmed/bpe:0.9.0
restart: on-failure
healthcheck:
test: [ "CMD", "java", "-cp", "dsf_bpe.jar", "org.highmed.dsf.bpe.StatusClient" ]
Expand Down Expand Up @@ -556,9 +547,6 @@ services:
- type: bind
source: ./dic-3/bpe/log
target: /opt/bpe/log
- type: bind
source: ./dic-3/bpe/last_event
target: /opt/bpe/last_event
- type: bind
source: ./dic-3/bpe/cache
target: /opt/bpe/cache
Expand Down
4 changes: 0 additions & 4 deletions feasibility-dsf-process-docker-test-setup/set-rights.sh
Original file line number Diff line number Diff line change
@@ -1,17 +1,13 @@
#!/usr/bin/env sh

chmod a+w dic-1/bpe/log
chmod a+w dic-1/bpe/last_event
chmod a+w dic-1/fhir/log

chmod a+w dic-2/bpe/log
chmod a+w dic-2/bpe/last_event
chmod a+w dic-2/fhir/log

chmod a+w dic-3/bpe/log
chmod a+w dic-3/bpe/last_event
chmod a+w dic-3/fhir/log

chmod a+w zars/bpe/log
chmod a+w zars/bpe/last_event
chmod a+w zars/fhir/log

This file was deleted.

4 changes: 2 additions & 2 deletions feasibility-dsf-process-tools/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -30,12 +30,12 @@
<dependency>
<groupId>org.highmed.dsf</groupId>
<artifactId>dsf-fhir-rest-adapter</artifactId>
<version>0.7.0</version>
<version>0.9.0</version>
</dependency>
<dependency>
<groupId>org.highmed.dsf</groupId>
<artifactId>dsf-fhir-server</artifactId>
<version>0.7.0</version>
<version>0.9.0</version>
</dependency>

</dependencies>
Expand Down
12 changes: 6 additions & 6 deletions feasibility-dsf-process/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -130,12 +130,12 @@ Besides the [common DSF settings controlled by different environment variables][

This version of the process is compatible with the following components:

| Component | Compatible Version(s) |
|-----------|---------------------------|
| DSF FHIR | `0.5.x`, `0.6.0`, `0.7.0` |
| DSF BPE | `0.5.x`, `0.6.0`, `0.7.0` |
| Blaze | `>= 0.12` |
| Flare | `1.0` |
| Component | Compatible Version(s) |
|-----------|-----------------------|
| DSF FHIR | `0.9.0` |
| DSF BPE | `0.9.0` |
| Blaze | `>= 0.12` |
| Flare | `1.0` |

**Note:** Flare got rewritten. Only the [new project][9] is supported.

Expand Down
4 changes: 2 additions & 2 deletions feasibility-dsf-process/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@
<dependency>
<groupId>org.highmed.dsf</groupId>
<artifactId>dsf-bpe-process-base</artifactId>
<version>0.7.0</version>
<version>0.9.0</version>
<scope>provided</scope>
</dependency>
<dependency>
Expand Down Expand Up @@ -82,7 +82,7 @@
<dependency>
<groupId>org.highmed.dsf</groupId>
<artifactId>dsf-fhir-validation</artifactId>
<version>0.7.0</version>
<version>0.9.0</version>
<scope>test</scope>
</dependency>
</dependencies>
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ public SendDicRequest(FhirWebserviceClientProvider clientProvider, TaskHelper ta
}

protected Stream<Task.ParameterComponent> getAdditionalInputParameters(DelegateExecution execution) {
Task task = getCurrentTaskFromExecutionVariables();
Task task = getCurrentTaskFromExecutionVariables(execution);

String measureId = getFhirWebserviceClientProvider().getLocalBaseUrl() + "/" + getMeasureId(task);
logger.debug("measureId = {}", measureId);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ public AggregateMeasureReports(FhirWebserviceClientProvider clientProvider, Task

@Override
protected void doExecute(DelegateExecution execution) {
Task task = getCurrentTaskFromExecutionVariables();
Task task = getCurrentTaskFromExecutionVariables(execution);
Map<Reference, MeasureReport> measureReports = getMeasureReportMap(execution);
measureReports.put(task.getRequester(), getMeasureReport(execution));
execution.setVariable(VARIABLE_MEASURE_REPORT_MAP, measureReports);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ public void afterPropertiesSet() throws Exception {

@Override
protected void doExecute(DelegateExecution execution) {
Task task = getCurrentTaskFromExecutionVariables();
Task task = getCurrentTaskFromExecutionVariables(execution);

IdType measureId = getMeasureId(task);
FhirWebserviceClient client = ((EnhancedFhirWebserviceClientProvider) getFhirWebserviceClientProvider())
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@ public void afterPropertiesSet() throws Exception {

@Override
protected void doExecute(DelegateExecution execution) {
Task task = getCurrentTaskFromExecutionVariables();
Task task = getCurrentTaskFromExecutionVariables(execution);
IdType measureReportId = getMeasureReportId(task);
FhirWebserviceClient client = ((EnhancedFhirWebserviceClientProvider) getFhirWebserviceClientProvider())
.getWebserviceClientByReference(measureReportId);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ public PrepareForFurtherEvaluation(FhirWebserviceClientProvider clientProvider,
@Override
protected void doExecute(DelegateExecution execution) {
for (Map.Entry<Reference, MeasureReport> entry : getMeasureReportMap(execution).entrySet()) {
getLeadingTaskFromExecutionVariables().addOutput(
getLeadingTaskFromExecutionVariables(execution).addOutput(
addOrganizationReference(createMeasureReportReferenceOutput(entry.getValue()), entry.getKey()));
}
}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -15,9 +15,7 @@

import java.util.Objects;

import static org.highmed.dsf.bpe.ConstantsBase.BPMN_EXECUTION_VARIABLE_TARGET;
import static org.highmed.dsf.bpe.ConstantsBase.CODESYSTEM_HIGHMED_BPMN;
import static org.highmed.dsf.bpe.ConstantsBase.CODESYSTEM_HIGHMED_BPMN_VALUE_CORRELATION_KEY;
import static org.highmed.dsf.bpe.ConstantsBase.*;

public class SelectResponseTarget extends AbstractServiceDelegate implements InitializingBean {

Expand All @@ -41,7 +39,7 @@ public void afterPropertiesSet() throws Exception {

@Override
protected void doExecute(DelegateExecution execution) {
Task task = getCurrentTaskFromExecutionVariables();
Task task = getCurrentTaskFromExecutionVariables(execution);

String correlationKey = getTaskHelper()
.getFirstInputParameterStringValue(task, CODESYSTEM_HIGHMED_BPMN,
Expand All @@ -50,6 +48,7 @@ protected void doExecute(DelegateExecution execution) {

execution.setVariable(BPMN_EXECUTION_VARIABLE_TARGET, TargetValues
.create(Target.createBiDirectionalTarget(targetOrganizationIdentifier.getValue(),
null,
endpointProvider.getFirstDefaultEndpointAddress(targetOrganizationIdentifier.getValue()).get(),
correlationKey)));
}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ public StoreLiveResult(FhirWebserviceClientProvider clientProvider, TaskHelper t

@Override
protected void doExecute(DelegateExecution execution) {
Task task = getCurrentTaskFromExecutionVariables();
Task task = getCurrentTaskFromExecutionVariables(execution);

MeasureReport measureReport = getMeasureReport(execution);
addReadAccessTag(measureReport);
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@
import org.hl7.fhir.r4.model.IdType;
import org.hl7.fhir.r4.model.Measure;
import org.hl7.fhir.r4.model.MeasureReport;
import org.hl7.fhir.r4.model.Task;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.InitializingBean;
Expand All @@ -30,10 +31,12 @@ public StoreMeasureReport(FhirWebserviceClientProvider clientProvider, TaskHelpe
@Override
protected void doExecute(DelegateExecution execution)
{
MeasureReport measureReport = (MeasureReport) execution.getVariable(VARIABLE_MEASURE_REPORT);
var leadingTask = getLeadingTaskFromExecutionVariables(execution);

MeasureReport measureReport = (MeasureReport) execution.getVariable(VARIABLE_MEASURE_REPORT);
Measure associatedMeasure = (Measure) execution.getVariable(VARIABLE_MEASURE);

addReadAccessTag(measureReport);
addReadAccessTag(measureReport, leadingTask);
referenceZarsMeasure(measureReport, associatedMeasure);
stripEvaluatedResources(measureReport);

Expand All @@ -43,9 +46,9 @@ protected void doExecute(DelegateExecution execution)
execution.setVariable(VARIABLE_MEASURE_REPORT_ID, measureReportId.getValue());
}

private void addReadAccessTag(MeasureReport measureReport)
private void addReadAccessTag(MeasureReport measureReport, Task leadingTask)
{
String identifier = getLeadingTaskFromExecutionVariables().getRequester().getIdentifier().getValue();
String identifier = leadingTask.getRequester().getIdentifier().getValue();
getReadAccessHelper().addOrganization(measureReport, identifier);
}

Expand Down