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Disease linked VNTRs
Mehrdad Bakhtiari edited this page Feb 27, 2018
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| VNTR ID | Chr | Gene Name | Annotation | Disease | Repeating Unit Pattern |
|---|---|---|---|---|---|
| 3056 | 1 | PER3 | Coding Region | Bipolar Disorder | CTGTCCACGGGATCGCCTCCCAGGAAGAATCCATCCCATCCTACTGCCAGCGCT |
| 25561 | 1 | MUC1 | Coding Region | MCKD1 | GGTGGAGCCCGGGGCCGGCCTGGTGTCCGGGGCCGAGGTGACACCGTGGGCTGGGGGGGC |
| 258405 | 2 | IL1RN | Intron | Stroke, CAD | ATCCTGGGGAAAGTGAGGGAAATATGGACATCACATGGAACAACATCCAGGAGACTCAGGCCTCTAGGAGTAACTGGGTAGTGTGC |
| None | 4 | DUX4 | - | FSHD | - |
| 379159 | 5 | DAT1 | UTR | ADHD, Parkinson's, Bipolar Disorder | ATGGGGGCCCTGCATGCGTCCTGGGGTAGTACACGCTCCT |
| 415277 | 6 | MUC21 | Coding Region | Diffuse panbronchiolitis (DPB) | CTCCAGTGGGGCCAGCACAGCCACCAACTCTGAGTCCAGCACGAC |
| 519759 | 9 | CEL | Coding Region | Monogenic diabetes | GGCCCCCCCCGTGCCGCCCACGGGTGACTCCGG |
| 70186 | 11 | INS | Promoter | T1D;T2D | TGTCCCCAGACCCC |
| 69212 | 11 | DRD4 | Coding Region | OCD, ADHD | CGCCCCCCGCGCCCGGCCTCCCCCAGGACCCCTGCGGCCCCGACTGTG |
| None | 15 | ACAN | Coding Region | Osteochondritis dissecans | CTCTGCCCCTGGAGTAGAGGACATCAGCGGGCTTCCTTCTGGAGAAGTTCTAGAGAC |
| 188871 | 17 | GP1BA | Coding Region | ATF in Stroke | AGCCCGACCACCCCAGAGCCCACCTCAGAGCCCGCCCCC |
| None | 17 | SERT | Intron | BPSD, Alzheimer's | ACAGCCCATCCCAGGTC |
| None | 17 | SERT | Promoter | OCD,Anxiety, Schizophrenia | TGCAGGGGGGATGCCGGGGG |
| 188143 | 17 | HIC1 | Promoter | Metastatic Colorectal Cancer | GCCTGGGCTGGGGCAGGGCTGTGAGACCCTCCCTTACAGAAGCAATGAGGGCTTGAGGAGGGGGTTAGGG |
| 301645 | 21 | CSTB | 5'UTR | Progressive myoclonic epilepsy 1A | CGCGGGGCGGGG |
| 532789 | X | MAOA | Promoter | Bipolar disorder | ACCGGCACCGGCACCAGTACCCGCACCAGT |