Feature/upload local recipes to s3

[rugeli]

Problem

What is the problem this work solves, including
Partially closing #140

Solution

What I/we did to solve this problem

• Updated simularium_helper.py to:
  - store local results to S3 path: cellpack-results/simularium
  - enable automatically opened packing results on Simularium
• Updated README

Note: a separate PR will handle the upload of metadata to firebase

Type of change

Please delete options that are not relevant.

• New feature (non-breaking change which adds functionality)

Steps to Verify:

1. Pack a local recipe: pack -r cellpack/tests/recipes/v2/test_spheres.json -c examples/packing-configs/sparse-packing.json
2. Check the uploaded object in S3 bucket, should look like this:

Keyfiles (delete if not relevant):

1. simularium_helper.py
2. AWSHandler.py

[codecov-commenter]

Codecov Report

Patch and project coverage have no change.

Comparison is base (2c9db6d) 98.52% compared to head (2b22d68) 98.52%.

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Additional details and impacted files

@@           Coverage Diff           @@
##             main     #189   +/-   ##
=======================================
  Coverage   98.52%   98.52%           
=======================================
  Files          16       16           
  Lines         476      476           
=======================================
  Hits          469      469           
  Misses          7        7           

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[github-actions]

Packing analysis report

Analysis for packing results located at cellpack/tests/outputs/test_spheres/spheresSST

Ingredient name	Encapsulating radius	Average number packed
ext_A	25	236.0

Packing image

Distance analysis

Expected minimum distance: 50.00
Actual minimum distance: 50.01

Ingredient key	Pairwise distance distribution
ext_A

[rugeli]

This PR focuses on uploading local recipes to S3 and is ready for prioritized merging after review. The database handler import issue has taken longer to resolve than anticipated, so I'll keep working on the run-recipes-from-firebase fixes when I return to town next week.

Once we all agree on the solution for database handler initiation and all related PRs are merged, I'll resume work on uploading remote recipes to S3 and storing metadata to firebase. Thanks!

[meganrm]

I might consider moving more of this into the handler. so in this file all you have to do is call url = AWSHandler(OPTIONS).save_file(file_path) and everything is handled by the other file

[mogres]

Looks good to me! I was able to run the specified recipe and it opened up results in a browser tab.

[mogres]

This is helpful, thanks for adding it in!