Add GWAS analyses using Scoary2 #62
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For now the views simply allow to select genomes as having a given phenotype, while the others are considered as not having it.
For orthogroups, the get_hit_descriptions method did not return a dataframe with one entry per hit, contrary to the same function for all other mixins. We therefore modify it to include processing of the data returned by the SQL query so that it returns a DataFrame similar to get_hit_descriptions from other mixins.
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With this PR we add views for GWAS for all annotation types.
For now the phenotype is defined by selecting species with the phenotype from a list. There are no other configuration parameters yet. I will add a dedicated form with the possibility to upload a phenotype file in a later PR.
The results are presented in tabular form. Other types of representations will be added separately.
Below an example screenshot for the GWAS analysis view and the box shown in the comparison index views.
Checklist