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Add VFs to locus and orthogroup views. #71

Merged
merged 24 commits into from
Mar 20, 2024
Merged

Add VFs to locus and orthogroup views. #71

merged 24 commits into from
Mar 20, 2024

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njohner
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@njohner njohner commented Mar 18, 2024

With this PR we add the virulence factors to the orthogroup and locus views. They are currently displayed as a simple table, which can get very long. Maybe we should do as for swissprot homologs and display the VFs as a datatable, with paging. We'll see what the situation is once we introduce identity filtering for VFs to the annotation pipeline.

We also refactor the locus and orthogroup views to diminish code repetition and cleanup the html templates.

orthogroup_vf

Checklist

  • Changelog entry
  • Check that tests still pass
  • Add tests for new features and regression tests for bugfixes whenever possible.

@njohner njohner force-pushed the nj/locus_vf branch 2 times, most recently from ebc857b to 24ead1b Compare March 18, 2024 14:40
@njohner njohner changed the title Nj/locus vf Add VFs to locus and orthogroup views. Mar 18, 2024
@njohner njohner marked this pull request as ready for review March 18, 2024 15:19
@njohner njohner deleted the nj/locus_vf branch March 20, 2024 11:45
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