Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Filter VF hits by SeqID and coverage and keep one hit per locus. #77

Merged
merged 5 commits into from
Apr 10, 2024
Merged

Filter VF hits by SeqID and coverage and keep one hit per locus. #77

merged 5 commits into from
Apr 10, 2024

Conversation

njohner
Copy link
Contributor

@njohner njohner commented Apr 10, 2024 •
edited
Loading

We can use the -max_hsps 1 option to limit search results as it will return the best (lowest evalue) hit for each subject/query pair. As we only want to keep one hit per locus, we further filter the results before uploading to the DB.

Checklist

  • Changelog entry
  • Check that tests still pass
  • Add tests for new features and regression tests for bugfixes whenever possible.

@njohner njohner merged commit 712ccc3 into master Apr 10, 2024
@njohner njohner deleted the nj/filter_vfs branch April 10, 2024 09:36
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@njohner