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testing with lapatinib parameters #1

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testing with lapatinib parameters #1

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Farnazmdi
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@Farnazmdi Farnazmdi commented Jun 28, 2023

Hi Dr. Meyer,
After the meeting with Heiser lab last week I realized that what you had in mind was indeed a simulation that we generate lineage trees with "parameters" estimated for lapatinib, but what I had sent you was lineages from the raw data, and that is why it was very perfect. I truely apologize that I had understood it incorrectly.
I fixed it here, this still needs some work as I need to sample from the censored distribution for root and leaf cells, but I guess it can show that with the parameters in an ideal case that we don't have cenrsorship, the oscillation still happens. Again, I am deeply sorry that I wrongly delivered something else, I should have asked for more clarification. I will complete this with censored observations considered and update you.

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