Fix bash history and auto-complete in interactive modes

Dockerfile

@@ -36,6 +36,6 @@ ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]
 # Add the base environment as the default Jupyter Python kernel
 RUN if [[ -n "$NOTEBOOK_MODE" ]] ; then python -m ipykernel install --user ; fi
 # For debugging, use this one
-# ENTRYPOINT ["/usr/local/bin/_entrypoint.sh", "/bin/sh"]
+# ENTRYPOINT ["/usr/local/bin/_entrypoint.sh", "/bin/bash"]
 # In a final application, you may want to hard-wire the entrypoint to the script:
 # ENTRYPOINT ["/usr/local/bin/_entrypoint.sh", "python", "./main.py"]

env.yaml.lock

@@ -4,7 +4,7 @@ channels:
 dependencies:
 - _openmp_mutex=4.5=2_gnu
 - anyio=4.3.0=pyhd8ed1ab_0
-- black=24.4.0=py312h996f985_0
+- black=24.4.2=py312h996f985_0
 - brotli-python=1.1.0=py312h2aa54b4_1
 - bzip2=1.0.8=h31becfc_5
 - ca-certificates=2024.2.2=hcefe29a_0
@@ -18,14 +18,14 @@ dependencies:
 - httpcore=1.0.5=pyhd8ed1ab_0
 - httpx=0.27.0=pyhd8ed1ab_0
 - hyperframe=6.0.1=pyhd8ed1ab_0
-- idna=3.6=pyhd8ed1ab_0
-- ld_impl_linux-aarch64=2.40=h2d8c526_0
+- idna=3.7=pyhd8ed1ab_0
+- ld_impl_linux-aarch64=2.40=hba4e955_0
 - libexpat=2.6.2=h2f0025b_0
 - libffi=3.4.2=h3557bc0_5
 - libgcc-ng=13.2.0=hf8544c7_5
 - libgomp=13.2.0=hf8544c7_5
 - libnsl=2.0.1=h31becfc_0
-- libsqlite=3.45.2=h194ca79_0
+- libsqlite=3.45.3=h194ca79_0
 - libstdcxx-ng=13.2.0=h9a76618_5
 - libuuid=2.38.1=hb4cce97_0
 - libxcrypt=4.4.36=h31becfc_1
@@ -38,7 +38,7 @@ dependencies:
 - packaging=24.0=pyhd8ed1ab_0
 - pathspec=0.12.1=pyhd8ed1ab_0
 - pip=24.0=pyhd8ed1ab_0
-- platformdirs=4.2.0=pyhd8ed1ab_0
+- platformdirs=4.2.1=pyhd8ed1ab_0
 - pygments=2.17.2=pyhd8ed1ab_0
 - pysocks=1.7.1=pyha2e5f31_6
 - python=3.12.3=h43d1f9e_0_cpython

notebook.yaml.lock

@@ -12,7 +12,7 @@ dependencies:
 - attrs=23.2.0=pyh71513ae_0
 - babel=2.14.0=pyhd8ed1ab_0
 - beautifulsoup4=4.12.3=pyha770c72_0
-- black=24.4.0=py312h996f985_0
+- black=24.4.2=py312h996f985_0
 - bleach=6.1.0=pyhd8ed1ab_0
 - brotli-python=1.1.0=py312h2aa54b4_1
 - bzip2=1.0.8=h31becfc_5
@@ -40,7 +40,7 @@ dependencies:
 - httpx=0.27.0=pyhd8ed1ab_0
 - hyperframe=6.0.1=pyhd8ed1ab_0
 - icu=73.2=h787c7f5_0
-- idna=3.6=pyhd8ed1ab_0
+- idna=3.7=pyhd8ed1ab_0
 - importlib-metadata=7.1.0=pyha770c72_0
 - importlib_metadata=7.1.0=hd8ed1ab_0
 - importlib_resources=6.4.0=pyhd8ed1ab_0
@@ -64,12 +64,12 @@ dependencies:
 - jupyter_events=0.10.0=pyhd8ed1ab_0
 - jupyter_server=2.14.0=pyhd8ed1ab_0
 - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
-- jupyterlab=4.1.6=pyhd8ed1ab_0
+- jupyterlab=4.1.8=pyhd8ed1ab_0
 - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
-- jupyterlab_server=2.26.0=pyhd8ed1ab_0
+- jupyterlab_server=2.27.1=pyhd8ed1ab_0
 - jupyterlab_widgets=3.0.10=pyhd8ed1ab_0
 - jupytext=1.16.1=pyhd8ed1ab_0
-- ld_impl_linux-aarch64=2.40=h2d8c526_0
+- ld_impl_linux-aarch64=2.40=hba4e955_0
 - libblas=3.9.0=22_linuxaarch64_openblas
 - libcblas=3.9.0=22_linuxaarch64_openblas
 - libexpat=2.6.2=h2f0025b_0
@@ -83,14 +83,14 @@ dependencies:
 - libnsl=2.0.1=h31becfc_0
 - libopenblas=0.3.27=pthreads_h5a5ec62_0
 - libsodium=1.0.18=hb9de7d4_1
-- libsqlite=3.45.2=h194ca79_0
+- libsqlite=3.45.3=h194ca79_0
 - libstdcxx-ng=13.2.0=h9a76618_5
 - libuuid=2.38.1=hb4cce97_0
 - libxcrypt=4.4.36=h31becfc_1
-- libxml2=2.12.6=h3091e33_1
+- libxml2=2.12.6=h3091e33_2
 - libxslt=1.1.39=h1cc9640_0
 - libzlib=1.2.13=h31becfc_5
-- lxml=5.1.0=py312h04464de_0
+- lxml=5.2.1=py312hf2f09fd_0
 - markdown-it-py=3.0.0=pyhd8ed1ab_0
 - markupsafe=2.1.5=py312h9ef2f89_0
 - matplotlib-inline=0.1.7=pyhd8ed1ab_0
@@ -105,7 +105,7 @@ dependencies:
 - nbformat=5.10.4=pyhd8ed1ab_0
 - ncurses=6.4.20240210=h0425590_0
 - nest-asyncio=1.6.0=pyhd8ed1ab_0
-- notebook=7.1.2=pyhd8ed1ab_0
+- notebook=7.1.3=pyhd8ed1ab_0
 - notebook-shim=0.2.4=pyhd8ed1ab_0
 - numpy=1.26.4=py312h470d778_0
 - openpyxl=3.1.2=py312hdd3e373_1
@@ -122,7 +122,7 @@ dependencies:
 - pickleshare=0.7.5=py_1003
 - pip=24.0=pyhd8ed1ab_0
 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
-- platformdirs=4.2.0=pyhd8ed1ab_0
+- platformdirs=4.2.1=pyhd8ed1ab_0
 - prettytable=3.10.0=pyhd8ed1ab_0
 - prometheus_client=0.20.0=pyhd8ed1ab_0
 - prompt-toolkit=3.0.42=pyha770c72_0
@@ -143,12 +143,12 @@ dependencies:
 - python_abi=3.12=4_cp312
 - pytz=2024.1=pyhd8ed1ab_0
 - pyyaml=6.0.1=py312hdd3e373_1
-- pyzmq=26.0.0=py312h1c32067_0
+- pyzmq=26.0.2=py312h7059f03_0
 - qtconsole-base=5.5.1=pyha770c72_0
 - qtpy=2.4.1=pyhd8ed1ab_0
 - rdflib=7.0.0=pyhd8ed1ab_0
 - readline=8.2=h8fc344f_1
-- referencing=0.34.0=pyhd8ed1ab_0
+- referencing=0.35.0=pyhd8ed1ab_0
 - requests=2.31.0=pyhd8ed1ab_0
 - rfc3339-validator=0.1.4=pyhd8ed1ab_0
 - rfc3986-validator=0.1.1=pyh9f0ad1d_0
@@ -163,12 +163,12 @@ dependencies:
 - stack_data=0.6.2=pyhd8ed1ab_0
 - tabulate=0.9.0=pyhd8ed1ab_1
 - terminado=0.18.1=pyh0d859eb_0
-- tinycss2=1.2.1=pyhd8ed1ab_0
+- tinycss2=1.3.0=pyhd8ed1ab_0
 - tk=8.6.13=h194ca79_0
 - toml=0.10.2=pyhd8ed1ab_0
 - tomli=2.0.1=pyhd8ed1ab_0
 - tornado=6.4=py312h9ef2f89_0
-- traitlets=5.14.2=pyhd8ed1ab_0
+- traitlets=5.14.3=pyhd8ed1ab_0
 - typer=0.12.3=pyhd8ed1ab_0
 - typer-slim=0.12.3=pyhd8ed1ab_0
 - typer-slim-standard=0.12.3=hd8ed1ab_0
@@ -182,7 +182,7 @@ dependencies:
 - wcwidth=0.2.13=pyhd8ed1ab_0
 - webcolors=1.13=pyhd8ed1ab_0
 - webencodings=0.5.1=pyhd8ed1ab_2
-- websocket-client=1.7.0=pyhd8ed1ab_0
+- websocket-client=1.8.0=pyhd8ed1ab_0
 - wheel=0.43.0=pyhd8ed1ab_1
 - widgetsnbextension=4.0.10=pyhd8ed1ab_0
 - xz=5.2.6=h9cdd2b7_0

run_notebook.sh

@@ -42,7 +42,7 @@ while getopts ":i" opt; do
     i)
       echo "Interactive mode enabled, starting shell and keeping terminal open (use 'exit' to quit)"
       echo Use e.g. $COMMAND
-      COMMAND="/bin/sh"
+      COMMAND="/bin/bash"
       ;;   
   esac
 done

run_script.sh

@@ -82,7 +82,7 @@ while getopts ":dDin" opt; do
     i)
       echo "INFO: Interactive mode enabled, keeping terminal open (use 'exit' to quit)"
       PARAMETERS="-it"
-      COMMAND="/bin/sh"
+      COMMAND="/bin/bash"
       ;;
     n)
       echo "INFO: Outbound network ENABLED (Warning: The script can access the entire host network)"