metAMOS-Pipeline

##Required Programs: ###At a glance:

Program	Version
Python	2.7
metAMOS	1.5rc3
gingr	1.2
harvesttools	1.2
mugsy	1r2
parsnp	1.1
prokka	1.1
MUMmer	3.23
fasttree	2.1.8

1. Tested with Python 2.7 along with the installed modules in python-modules.txt To easily satisfy these dependencies, run:

   pip install -r python-modules-required.req
   

   Which will install them all to your virtual environment or (with sudo permissions) on your whole machine.

2. metAMOS

3. gingr

4. harvesttools

5. mugsy

6. parsnp

7. prokka