##Required Programs: ###At a glance:
Program | Version |
---|---|
Python | 2.7 |
metAMOS | 1.5rc3 |
gingr | 1.2 |
harvesttools | 1.2 |
mugsy | 1r2 |
parsnp | 1.1 |
prokka | 1.1 |
MUMmer | 3.23 |
fasttree | 2.1.8 |
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Tested with Python 2.7 along with the installed modules in python-modules.txt To easily satisfy these dependencies, run:
pip install -r python-modules-required.req
Which will install them all to your virtual environment or (with sudo permissions) on your whole machine.
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metAMOS
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gingr
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harvesttools
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mugsy
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parsnp
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prokka