[GPU] Add support for linear tree with device=gpu #9239
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: R-package | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| # automatically cancel in-progress builds if another commit is pushed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| # https://github.com/actions/checkout/issues/1590#issuecomment-2207052044 | |
| # | |
| # this could be removed (hopefully) when R 3.6 support is removed | |
| ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION: true | |
| # in CMake-driven builds, parallelize compilation | |
| CMAKE_BUILD_PARALLEL_LEVEL: 4 | |
| # on Debian-based images, avoid interactive prompts | |
| DEBIAN_FRONTEND: noninteractive | |
| # parallelize compilation (extra important for Linux, where CRAN doesn't supply pre-compiled binaries) | |
| MAKEFLAGS: "-j4" | |
| # hack to get around this: | |
| # https://stat.ethz.ch/pipermail/r-package-devel/2020q3/005930.html | |
| _R_CHECK_SYSTEM_CLOCK_: 0 | |
| # ignore R CMD CHECK NOTE checking how long it has | |
| # been since the last submission | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: 0 | |
| # CRAN ignores the "installed size is too large" NOTE, | |
| # so our CI can too. Setting to a large value here just | |
| # to catch extreme problems | |
| _R_CHECK_PKG_SIZES_THRESHOLD_: 100 | |
| jobs: | |
| test: | |
| name: ${{ matrix.task }} (${{ matrix.os }}, ${{ matrix.compiler }}, R ${{ matrix.r_version }}, ${{ matrix.build_type }}) | |
| runs-on: ${{ matrix.os }} | |
| container: ${{ matrix.container }} | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| ################ | |
| # CMake builds # | |
| ################ | |
| - os: ubuntu-latest | |
| task: r-package | |
| compiler: gcc | |
| r_version: 3.6 | |
| build_type: cmake | |
| container: 'ubuntu:18.04' | |
| - os: ubuntu-latest | |
| task: r-package | |
| compiler: gcc | |
| r_version: 4.3 | |
| build_type: cmake | |
| container: 'ubuntu:22.04' | |
| - os: ubuntu-latest | |
| task: r-package | |
| compiler: clang | |
| r_version: 4.3 | |
| build_type: cmake | |
| container: 'ubuntu:22.04' | |
| - os: macos-13 | |
| task: r-package | |
| compiler: gcc | |
| r_version: 4.3 | |
| build_type: cmake | |
| container: null | |
| - os: macos-13 | |
| task: r-package | |
| compiler: clang | |
| r_version: 4.3 | |
| build_type: cmake | |
| container: null | |
| - os: windows-latest | |
| task: r-package | |
| compiler: MINGW | |
| toolchain: MINGW | |
| r_version: 3.6 | |
| build_type: cmake | |
| container: null | |
| - os: windows-latest | |
| task: r-package | |
| compiler: MINGW | |
| toolchain: MSYS | |
| r_version: 4.3 | |
| build_type: cmake | |
| container: null | |
| # Visual Studio 2019 | |
| - os: windows-2019 | |
| task: r-package | |
| compiler: MSVC | |
| toolchain: MSVC | |
| r_version: 3.6 | |
| build_type: cmake | |
| container: null | |
| # Visual Studio 2022 | |
| - os: windows-2022 | |
| task: r-package | |
| compiler: MSVC | |
| toolchain: MSVC | |
| r_version: 4.3 | |
| build_type: cmake | |
| container: null | |
| ############### | |
| # CRAN builds # | |
| ############### | |
| - os: windows-latest | |
| task: r-package | |
| compiler: MINGW | |
| toolchain: MINGW | |
| r_version: 3.6 | |
| build_type: cran | |
| container: null | |
| - os: windows-latest | |
| task: r-package | |
| compiler: MINGW | |
| toolchain: MSYS | |
| r_version: 4.3 | |
| build_type: cran | |
| container: null | |
| - os: ubuntu-latest | |
| task: r-package | |
| compiler: gcc | |
| r_version: 4.3 | |
| build_type: cran | |
| container: 'ubuntu:22.04' | |
| - os: macos-13 | |
| task: r-package | |
| compiler: clang | |
| r_version: 4.3 | |
| build_type: cran | |
| container: null | |
| # macos-14 = arm64 | |
| - os: macos-14 | |
| task: r-package | |
| compiler: clang | |
| r_version: 4.3 | |
| build_type: cran | |
| container: null | |
| steps: | |
| - name: Prevent conversion of line endings on Windows | |
| if: startsWith(matrix.os, 'windows') | |
| shell: pwsh | |
| run: git config --global core.autocrlf false | |
| - name: Install packages used by third-party actions | |
| if: startsWith(matrix.os, 'ubuntu') | |
| shell: bash | |
| run: | | |
| apt-get update -y | |
| apt-get install --no-install-recommends -y \ | |
| ca-certificates \ | |
| dirmngr \ | |
| gpg \ | |
| gpg-agent \ | |
| software-properties-common \ | |
| sudo | |
| # install newest version of git | |
| # ref: | |
| # - https://unix.stackexchange.com/a/170831/550004 | |
| # - https://git-scm.com/download/linux | |
| add-apt-repository ppa:git-core/ppa -y | |
| apt-get update -y | |
| apt-get install --no-install-recommends -y \ | |
| git | |
| - name: Trust git cloning LightGBM | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: | | |
| git config --global --add safe.directory "${GITHUB_WORKSPACE}" | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 5 | |
| submodules: true | |
| - name: Install pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| if: matrix.container != 'ubuntu:18.04' | |
| # R 3.6 binary isn't easily available on Ubuntu 18.04, | |
| # but setup-pandoc>=2.7.1 is uses a too-new glibc for it. | |
| # ref: https://github.com/microsoft/LightGBM/issues/6298 | |
| - name: Install pandoc | |
| uses: r-lib/actions/setup-pandoc@v2.6.0 | |
| if: matrix.container == 'ubuntu:18.04' | |
| - name: Install tinytex | |
| if: startsWith(matrix.os, 'windows') | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| env: | |
| CTAN_MIRROR: https://ctan.math.illinois.edu/systems/win32/miktex | |
| TINYTEX_INSTALLER: TinyTeX | |
| - name: Setup and run tests on Linux and macOS | |
| if: startsWith(matrix.os, 'macos') || startsWith(matrix.os, 'ubuntu') | |
| shell: bash | |
| run: | | |
| export TASK="${{ matrix.task }}" | |
| export COMPILER="${{ matrix.compiler }}" | |
| if [[ "${{ matrix.os }}" =~ ^macos ]]; then | |
| export OS_NAME="macos" | |
| elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then | |
| export OS_NAME="linux" | |
| export IN_UBUNTU_BASE_CONTAINER="true" | |
| fi | |
| export BUILD_DIRECTORY="$GITHUB_WORKSPACE" | |
| export R_VERSION="${{ matrix.r_version }}" | |
| export R_BUILD_TYPE="${{ matrix.build_type }}" | |
| $GITHUB_WORKSPACE/.ci/setup.sh | |
| $GITHUB_WORKSPACE/.ci/test.sh | |
| - name: Setup and run tests on Windows | |
| if: startsWith(matrix.os, 'windows') | |
| shell: pwsh -command ". {0}" | |
| run: | | |
| $env:BUILD_SOURCESDIRECTORY = $env:GITHUB_WORKSPACE | |
| $env:LGB_VER = (Get-Content -TotalCount 1 $env:BUILD_SOURCESDIRECTORY\VERSION.txt).trim().replace('rc', '-') | |
| $env:TOOLCHAIN = "${{ matrix.toolchain }}" | |
| $env:R_VERSION = "${{ matrix.r_version }}" | |
| $env:R_BUILD_TYPE = "${{ matrix.build_type }}" | |
| $env:COMPILER = "${{ matrix.compiler }}" | |
| $env:TASK = "${{ matrix.task }}" | |
| & "$env:GITHUB_WORKSPACE/.ci/test-windows.ps1" | |
| test-r-sanitizers: | |
| name: r-sanitizers (ubuntu-latest, R-devel, ${{ matrix.compiler }} ASAN/UBSAN) | |
| timeout-minutes: 60 | |
| runs-on: ubuntu-latest | |
| container: wch1/r-debug | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - r_customization: san | |
| compiler: gcc | |
| - r_customization: csan | |
| compiler: clang | |
| steps: | |
| - name: Trust git cloning LightGBM | |
| run: | | |
| git config --global --add safe.directory "${GITHUB_WORKSPACE}" | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 5 | |
| submodules: true | |
| - name: Install packages | |
| shell: bash | |
| run: | | |
| RDscript${{ matrix.r_customization }} -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" | |
| sh build-cran-package.sh --r-executable=RD${{ matrix.r_customization }} | |
| RD${{ matrix.r_customization }} CMD INSTALL lightgbm_*.tar.gz || exit 1 | |
| - name: Run tests with sanitizers | |
| shell: bash | |
| run: | | |
| cd R-package/tests | |
| exit_code=0 | |
| RDscript${{ matrix.r_customization }} testthat.R >> tests.log 2>&1 || exit_code=-1 | |
| cat ./tests.log | |
| exit ${exit_code} | |
| test-r-extra-checks: | |
| name: r-package (${{ matrix.image }}, R-devel) | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # references: | |
| # * CRAN "additional checks": https://cran.r-project.org/web/checks/check_issue_kinds.html | |
| # * images: https://r-hub.github.io/containers/containers.html | |
| image: | |
| - clang16 | |
| - clang17 | |
| - clang18 | |
| - clang19 | |
| - gcc14 | |
| - intel | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/r-hub/containers/${{ matrix.image }}:latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 5 | |
| submodules: true | |
| - name: Install pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install LaTeX | |
| shell: bash | |
| run: | | |
| if type -f apt 2>&1 > /dev/null; then | |
| apt-get update | |
| apt-get install --no-install-recommends -y \ | |
| devscripts \ | |
| texinfo \ | |
| texlive-latex-extra \ | |
| texlive-latex-recommended \ | |
| texlive-fonts-recommended \ | |
| texlive-fonts-extra \ | |
| tidy \ | |
| qpdf | |
| else | |
| yum update -y | |
| yum install -y \ | |
| devscripts \ | |
| qpdf \ | |
| texinfo \ | |
| texinfo-tex \ | |
| texlive-latex \ | |
| tidy | |
| fi | |
| - name: Install packages and run tests | |
| shell: bash | |
| run: | | |
| Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" | |
| sh build-cran-package.sh | |
| if [[ "${{ matrix.image }}" =~ "clang" ]]; then | |
| # allowing the following NOTEs (produced by default in the clang images): | |
| # | |
| # * checking compilation flags used ... NOTE | |
| # Compilation used the following non-portable flag(s): | |
| # ‘-Wp,-D_FORTIFY_SOURCE=3’ | |
| # | |
| # even though CRAN itself sets that: | |
| # https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-clang | |
| # | |
| declare -i allowed_notes=1 | |
| else | |
| declare -i allowed_notes=0 | |
| fi | |
| bash .ci/run-r-cmd-check.sh \ | |
| "$(echo lightgbm_$(head -1 VERSION.txt).tar.gz)" \ | |
| "${allowed_notes}" | |
| all-r-package-jobs-successful: | |
| if: always() | |
| runs-on: ubuntu-latest | |
| needs: [test, test-r-sanitizers, test-r-extra-checks] | |
| steps: | |
| - name: Note that all tests succeeded | |
| uses: re-actors/alls-green@v1.2.2 | |
| with: | |
| jobs: ${{ toJSON(needs) }} |