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Add virtual file system settings and hook proc
On index load, clear/set the skip worktree bits based on the virtual file system data. Use virtual file system data to update skip-worktree bit in unpack-trees. Use virtual file system data to exclude files and folders not explicitly requested. Update 2022-04-05: disable the "present-despite-SKIP_WORKTREE" file removal behavior when 'core.virtualfilesystem' is enabled. Signed-off-by: Ben Peart <benpeart@microsoft.com>
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