Fix "broken" domain reporting

1.1.1

Version UPD, fix bug with broken domains/piis

STAR-fusion support and fixes

• Support for STAR-fusion, use starfusion input type
• Now one can specify FPGs with full/no transcript in fusion. To do that set the coordinate to transcript start-1 or transcript end+1 depending on gene strand.
• Some parser fixes

Hotfix

• Fix strand info processing bug in 1.0.9b1

Discordant fusion filter

• Filters head-to-head and tail-to-tail fusions
• Fixed issues with parallel processing of STAR output

New pre-filter added (experimental)

Now filters fusions with discordant FPG direction filtering. Note that this release enforced providing strand information in coord input format. As it was not clearly stated and became confusing, as well for the sake of backward-compatibility, this feature is fixed in 515d62b.

Intelligent read statistics reporting

• Fix for fusioncatcher
• Update for "coord" format

Extended to hg19 and hg38

• Several minor improvements.
• Added support for hg19 and hg38 references.

Legacy Oncofuse release