This package provides native R-bindings for interfacing with Tomahawk libraries and provides additional graphical functionality. This means exposing most of the features and flexibility of the C++ API while not sacrificing the usability that R provides.
| GWAS plots | Dense LD data | Square LD data |
|---|---|---|
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- Read the documentation
- Your processor should support SSE4.2 (It is supported by most Intel and AMD processors released since 2008.)
- C++11 compliant compiler (GCC is assumed)
- A Linux-like distribution is assumed by the makefile
For Ubuntu, Debian, and Mac systems, installation is easy: just run
git clone --recursive https://github.com/mklarqvist/rtomahawk
R CMD INSTALL rtomahawkor in R
install.packages(path_to_rtomahawk, repos = NULL, type="source")or alternatively
library(devtools)
install_github("mklarqvist/rtomahawk")Check that the package can be loaded and list the built libraries (in R):
library(rtomahawk)
tomahawkVersion()This will print a version string to the console:
rtomahawk: 0.1.1
Libraries: tomahawk-0.7.1; ZSTD-1.3.1; htslib 1.9
Interested in contributing? Fork and submit a pull request and it will be reviewed.
We are actively developing Tomahawk and are always interested in improving its quality. If you run into an issue, please report the problem on our Issue tracker. Be sure to add enough detail to your report that we can reproduce the problem and address it. We have not reached version 1.0 and as such the function names may change.
This is rtomahawk 0.1.1. rtomahawk follows semantic versioning.
Marcus D. R. Klarqvist (mk819@cam.ac.uk)
Department of Genetics, University of Cambridge
Wellcome Sanger Institute
rtomahawk is licensed under MIT
tomahawk is licensed under
MIT