Merge branch 'dev' into 102_standardize_compute_fntrs

mmcdermott · Aug 3, 2024 · 8d3698a · 8d3698a
2 parents 176eafb + 8aef5d5
commit 8d3698a
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diff --git a/MIMIC-IV_Example/configs/event_configs.yaml b/MIMIC-IV_Example/configs/event_configs.yaml
@@ -276,7 +276,6 @@ icu/inputevents:
         description: ["omop_concept_name", "label"] # List of strings are columns to be collated
         itemid: "itemid (omop_source_code)"
         parent_codes: "{omop_vocabulary_id}/{omop_concept_code}"
-        rateuom: null # A null column means this column is needed in pulling from the metadata.
   input_end:
     code:
       - INFUSION_END
@@ -296,8 +295,6 @@ icu/inputevents:
         description: ["omop_concept_name", "label"] # List of strings are columns to be collated
         itemid: "itemid (omop_source_code)"
         parent_codes: "{omop_vocabulary_id}/{omop_concept_code}"
-        statusdescription: null
-        amountuom: null
   patient_weight:
     code:
       - PATIENT_WEIGHT_AT_INFUSION

diff --git a/src/MEDS_transforms/configs/stage_configs/extract_code_metadata.yaml b/src/MEDS_transforms/configs/stage_configs/extract_code_metadata.yaml
@@ -1,3 +1,3 @@
 extract_code_metadata:
   is_metadata: true
-  description_seperator: "\n"
+  description_separator: "\n"