Skip to content

Commit

Permalink
Fixed lint issues.
Browse files Browse the repository at this point in the history
  • Loading branch information
mmcdermott committed Jun 15, 2024
1 parent bd035b9 commit b48aefd
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions MIMIC-IV_Example/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -251,14 +251,16 @@ mbm47 in  compute-a-17-72 in MEDS_polars_functions on  preprocessing_steps
```

8. Fit vocabulary:

```bash
mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 2s
mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 2s
❯ ./scripts/preprocessing/fit_vocabulary_indices.py input_dir="$MIMICIV_MEDS_DIR/3workers_slurm" cohort_dir="$MIMICIV_MEDS_PROC_DIR/test" code_modifier_columns=null
```

9. Normalize:

```bash
mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 4s
mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 4s
❯ ./scripts/preprocessing/normalize.py --multirun worker="range(0,3)" hydra/launcher=joblib input_dir="$MIMICIV_MEDS_DIR/3workers_slurm" cohort_dir="$MIMICIV_MEDS_PROC_DIR/test" code_modifie
r_columns=null
```
Expand Down

0 comments on commit b48aefd

Please sign in to comment.