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[ENH, MRG] Add volume/tumor segmentation #8

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merged 50 commits into from
Dec 7, 2023

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alexrockhill
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@alexrockhill alexrockhill commented Apr 13, 2023

Within-MNE solution for mne-tools/mne-python#10860.

Here's how it works:

find_tumor.webm

@alexrockhill
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alexrockhill commented Apr 25, 2023

TO DO:

  • Write tests
  • Add mark all/globally for vasculature
  • Add brainmask also for vasculature
  • Add example data (same as for grids potentially
  • Write example

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The plan is to add a tumor and microgrids dataset in a couple weeks/months and make an example that combines this PR and #10 to show how to locate contacts from a surgical image over a tumor.

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Thoughts on merging this now and then adding it in an example when #10 merges?

We already closed the issue on segmenting a tumor so it might make sense to merge.

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larsoner commented Dec 6, 2023

Seems reasonable to me

@alexrockhill alexrockhill changed the title [ENH, WIP] Minimal working version for tumor segmentation [ENH, MRG] Add volume/tumor segmentation Dec 6, 2023
@alexrockhill alexrockhill merged commit b5d4917 into mne-tools:main Dec 7, 2023
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@alexrockhill alexrockhill deleted the seg branch December 7, 2023 15:59
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2 participants