Vizualization framework for channel specific annotations #1137
Workflow file for this run
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| name: CIs | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }} | |
| cancel-in-progress: true | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| schedule: | |
| - cron: "0 4 * * 1" # At 04:00 on Monday | |
| jobs: | |
| pytest: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu, windows, macos] | |
| mne: [main, maint/1.4] | |
| opengl: ['opengl'] | |
| python: ['3.11'] | |
| name: [matrix] | |
| pip: [''] | |
| include: | |
| - os: ubuntu | |
| mne: main | |
| opengl: 'opengl' | |
| python: '3.8' | |
| name: old 3.8 | |
| - os: ubuntu | |
| mne: main | |
| opengl: '' | |
| python: '3.9' | |
| name: no opengl | |
| - os: ubuntu | |
| mne: maint/1.4 | |
| opengl: '' | |
| python: '3.9' | |
| name: no opengl | |
| - os: ubuntu | |
| mne: maint/1.3 | |
| opengl: 'opengl' | |
| python: '3.9' | |
| name: old | |
| - os: ubuntu | |
| mne: main | |
| opengl: 'opengl' | |
| python: '3.11' | |
| pip: pre | |
| name: pip-pre | |
| name: pytest ${{ matrix.name }} / ${{ matrix.os }} / MNE ${{ matrix.mne }} | |
| runs-on: ${{ matrix.os }}-latest | |
| env: | |
| MNE_LOGGING_LEVEL: 'warning' | |
| MKL_NUM_THREADS: '1' | |
| PYTHONUNBUFFERED: '1' | |
| MNE_BRANCH: ${{ matrix.mne }} | |
| PYTHON_VERSION: ${{ matrix.python }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install dependencies | |
| run: | # use MNE main to ensure test files are available | |
| set -eo pipefail | |
| python -m pip install --upgrade pip | |
| git clone -b ${MNE_BRANCH} --single-branch --branch main https://github.com/mne-tools/mne-python.git ../mne-python | |
| python -m pip install -qe ../mne-python | |
| if [[ "${{ matrix.opengl }}" == "opengl" ]]; then | |
| PIP_OPTION="[opengl,tests]" | |
| else | |
| PIP_OPTION="[tests]" | |
| fi | |
| python -m pip install -ve .${PIP_OPTION} PyQt5 | |
| if [[ "${{ matrix.pip }}" == "pre" ]]; then | |
| echo "Upgrading to pre-release NumPy, SciPy, and matplotlib" | |
| python -m pip install --upgrade --pre --only-binary ":all:" --default-timeout=60 --extra-index-url "https://pypi.anaconda.org/scientific-python-nightly-wheels/simple" numpy scipy matplotlib | |
| fi | |
| - run: ./tools/get_testing_version.sh | |
| name: 'Get testing version' | |
| working-directory: ../mne-python | |
| - uses: actions/cache@v3 | |
| with: | |
| key: ${{ env.TESTING_VERSION }} | |
| path: ~/mne_data | |
| name: 'Cache testing data' | |
| - run: python -c 'import mne; print(mne.datasets.testing.data_path(verbose=True))' | |
| name: 'Download testing data' | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| - run: glxinfo | grep enderer | |
| name: Check OpenGL | |
| working-directory: ../mne-python | |
| if: runner.os == 'Linux' && contains(matrix.opengl, 'opengl') | |
| - name: Show system information | |
| run: mne sys_info | |
| - run: pytest -m pgtest --cov=mne_qt_browser --cov-report=xml ../mne-python/mne/report ../mne-python/mne/viz | |
| name: Run MNE-Tests | |
| - run: pytest --error-for-skips mne_qt_browser/tests/test_pg_specific.py | |
| name: Run pyqtgraph-specific tests | |
| # These are slow on macOS, so skip them | |
| - run: pytest mne_qt_browser/tests/test_speed.py | |
| name: Run benchmarks | |
| if: runner.os != 'macOS' | |
| - uses: codecov/codecov-action@v1 | |
| if: always() | |
| name: 'Upload coverage to CodeCov' | |
| qt: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu] | |
| mne: [main] | |
| opengl: [opengl] | |
| qt: [PyQt5, PyQt6, PySide2, PySide6] | |
| python: ['3.10'] # When going to 3.11, PySide2 should be removed or special-cased | |
| name: [matrix] | |
| include: | |
| - os: macos | |
| mne: main | |
| opengl: 'opengl' | |
| qt: PySide6 | |
| python: '3.11' | |
| - os: windows | |
| mne: main | |
| opengl: 'opengl' | |
| qt: PySide6 | |
| python: '3.11' | |
| name: ${{ matrix.qt }} / ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }}-latest | |
| env: | |
| MNE_LOGGING_LEVEL: 'warning' | |
| MKL_NUM_THREADS: '1' | |
| PYTHONUNBUFFERED: '1' | |
| MNE_BRANCH: ${{ matrix.mne }} | |
| PYTHON_VERSION: ${{ matrix.python }} | |
| QT_LIB: ${{ matrix.qt }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install dependencies | |
| run: | # use MNE main to ensure test files are available | |
| set -eo pipefail | |
| python -m pip install --upgrade pip | |
| git clone -b ${MNE_BRANCH} --single-branch --branch main https://github.com/mne-tools/mne-python.git ../mne-python | |
| python -m pip install -qe ../mne-python | |
| # Avoid a problematic version of PySide6 | |
| # https://wiki.qt.io/Qt_for_Python_Development_Notes#1._Juni_2023 | |
| if [[ "$QT_LIB" == "PySide6" ]]; then | |
| QT_LIB_INSTALL="PySide6!=6.5.1" | |
| else | |
| QT_LIB_INSTALL="$QT_LIB" | |
| fi | |
| if [[ "${{ matrix.opengl }}" == "opengl" ]]; then | |
| PIP_OPTION="[opengl,tests]" | |
| else | |
| PIP_OPTION="[tests]" | |
| fi | |
| python -m pip install -ve .${PIP_OPTION} ${QT_LIB_INSTALL} | |
| - name: Patch MNE 1.4 test | |
| if: ${{ matrix.mne == '1.4' }} | |
| run: patch -d ../mne-python < .github/workflows/mne_1_4.patch | |
| - shell: bash -e {0} | |
| run: ./tools/get_testing_version.sh | |
| name: 'Get testing version' | |
| working-directory: ../mne-python | |
| - uses: actions/cache@v3 | |
| with: | |
| key: ${{ env.TESTING_VERSION }} | |
| path: ~/mne_data | |
| name: 'Cache testing data' | |
| - run: python -c 'import mne; print(mne.datasets.testing.data_path(verbose=True))' | |
| name: 'Download testing data' | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| - name: Start Qt on its own | |
| run: LD_DEBUG=libs python -c "from ${QT_LIB}.QtWidgets import QApplication, QWidget; app = QApplication([]); import matplotlib; matplotlib.use('QtAgg'); import matplotlib.pyplot as plt; plt.figure()" | |
| - name: Check Qt | |
| run: | | |
| mne sys_info -pd | |
| echo ${QT_LIB}: | |
| mne sys_info -pd | grep "^.*qtpy.*${QT_LIB}=.*$" | |
| - run: pytest -m pgtest --cov=mne_qt_browser --cov-report=xml ../mne-python/mne/report ../mne-python/mne/viz | |
| name: Run MNE-Tests | |
| - run: pytest --error-for-skips mne_qt_browser/tests/test_pg_specific.py | |
| name: Run pyqtgraph-specific tests | |
| # For some reason this dies on Linux PySide2. We can live without this | |
| # case given our primary target moving forward is Qt6+ | |
| - run: pytest mne_qt_browser/tests/test_speed.py | |
| name: Run benchmarks | |
| if: runner.os != 'Linux' || (matrix.qt != 'PySide2' && matrix.qt != 'PyQt5') | |
| - uses: codecov/codecov-action@v1 | |
| if: always() | |
| name: 'Upload coverage to CodeCov' |