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removed unproper use or Pair
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beboche committed Aug 17, 2018
1 parent f8a9ddd commit 360d0bb
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion modules/gatkHaplotypeCaller.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,8 @@ task gatkHaplotypeCaller {
File BamFile
File BamIndex
#when callcaching on, seem to keep Bam and index in the same directory for HC execution
Pair[File, File] Bam = (BamFile, BamIndex)
#does not work in fine...
#Pair[File, File] Bam = (BamFile, BamIndex)
String SwMode
command {
${SrunLow} ${GatkExe} HaplotypeCaller \
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