Utilisation de micromamba pour installer et tester le package#102

Merged

FlxPo merged 119 commits intomainfrom gh-action-install-with-micromamba

May 2, 2024

+5,996-2,771

Commits on May 2, 2024

add openpyxl
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Create install-and-test.yml
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add presentation
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add quickstart + definitions
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add quickstart + definitions docs
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functions to build transport zones from a city id
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add a function to download osm regional extracts from geofabrik, crop them to match the transport zones boundary, extract only relevant ways for a given mode, merge the cropped and filtered files
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refactor: download_file function + use of env variables for configuration (data folders, proxy url, ...) + integration of dodgr
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add dodgr function to compute travel costs + add function caching mechanism
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create RScript python class + create separate R packages installations scripts called from mobility.setup + distribute a forked version of the osmdata R package as a binary to speed up OSM data par…
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remove MANIFEST.in
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update pyproject.toml
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formatting code and renaming setup tp set_params

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add Mamba

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Update tests

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Update Python version for tests

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Use micromamba shell

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Update python-package.yml

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Update python-package.yml

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Update test_parsers.py

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Update test_parsers.py

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throw an error if the user asks for a mode not available
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first working version of public transport travel costs calculations
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small fix
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create two distinct classes TravelCosts (car, walk, bicycle) and PublicTravelCosts (all public transport modes) + create a GTFS class to handle download / aggregation / GTFS router object preparation
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test another strategy

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try conda

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fix incomplete dodgr OSM tags filtering + download community GTFS resources (from google) + check if downloaded GTFS file is OK + add transfers / fix incoherent stop times in GTFS feeds
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convert public transport travel costs to km and h
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fix GTFS files with duplicated calendar - calendar_dates tables (example Marseille) + start implementing the population / trip localizer functionnality
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remove print
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add population generation scripts
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Update test_parsers.py

Mind-the-Cap
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Update test_parsers.py

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Update python-package.yml

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Update test_parsers.py

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Update trip_sampler.py

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Update trip_sampler.py

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Update .readthedocs.yaml

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Create requirements.txt

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Update .readthedocs.yaml

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Update python-package.yml

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Update test_parsers.py

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Create test_transport_zones

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Update test_ademe_base_carbone_api.py

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Rename test_transport_zones to test_transport_zones.py

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Update test_transport_zones.py

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Update test_transport_zones.py

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Update test_transport_zones.py

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create a Trips class to handle trip sampling and localization
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add urban unit category info in the trips sampling
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pseudo code for trip localization
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create a LocalizedTrips class + complete trip localization example
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fix cantville code for marseille in census data + break the localize_trips method into small submethods
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fix R output decoding issue + ignore corrupted GTFS zip files + fix pandas sampling error when p = 0
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fix gtfsrouter preparation bug when feeds have no calendar or no calendar dates + select automatically a date when the merged GTFS feed overlap
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Ajout school_attendance

martaducamp
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correction data/schools

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suppression .parquet

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Revert "correction data/schools"
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Revert "Ajout school_attendance"
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Revert "suppression .parquet"
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remove debugging statements
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fix pyproject.toml module location
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create dev dependencies in pyproject.toml + adapt github workflow
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fix pytest running outside of the mamba env
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call pytest directly in mamba shell
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activate bash shell
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add data folder to pyproject.toml
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pin R version in environment.yml
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remove print
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add R files to pyproject.toml to include them in the package and access them with importlib.resources
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Correct travel costs script

Mind-the-Cap
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create data and project folders if the do not already exist
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rewrite tests
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fix mobility surveys df names + cast pandas qcut intervals limits to float to avoid a warning
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add localized trips test + change test city to rodez (smaller inputs)
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cast paths to str when setting env vars
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install osmdata from cran if platform != windows
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add docstrings to MobilitySurvey / Trips
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pin R version
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fix binary / cran install logic
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fix 2
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print logs when testing
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move tests for debugging
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Switch github action to windows instead of linux
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move tests
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move tests
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print all of R's output
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print all of R's output
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unquiet R package installation
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add build arg to stringi install
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switch r packages repo
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install rtools
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fix
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separate R setup in github actions
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fix stupid naming error
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remove r-lib action useless parameter
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fix
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fix
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add osmdata to deps
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log everything
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log everything
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add log4r
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remve print
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test all
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debug
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fix wrong path to gtfs_route_types.xlsx
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try to change xlsx file path
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add full package-data path to pyproject.toml
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extract trips localization steps into different classes
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Update job_active_population.py

Mind-the-Cap
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add print to understand failing tests

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fix in gtfs.py

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Update gtfs.py

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extract trips localization steps into different classes
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replace get_insee_data by JobsActivePopulationDistribution class
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add logs to investigate csv not found error
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change csv path to be case sensitive
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