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Ci #41

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2ff6744
ci: ubuntu latest
Quentin62 Feb 12, 2023
c9087f5
ci: ubuntu-latest
Quentin62 Feb 12, 2023
aafd582
ci: add clang16 action
Quentin62 Feb 13, 2023
deda514
ci: change image name
Quentin62 Mar 22, 2023
62f6555
ci: install git
Quentin62 Mar 22, 2023
88b527d
ci: submodule checkout
Quentin62 Mar 22, 2023
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68 changes: 68 additions & 0 deletions .github/workflows/RMixtComp-clang.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
name: RMixtComp with clang16

on:
push:
branches:
- master
- staging
paths:
- 'MixtComp/**'
- '!MixtComp/docs/**'
- 'RMixtComp/**'
- 'RMixtCompIO/**'
- 'RMixtCompUtilities/**'
- '.github/workflows/RMixtComp-clang.yml'
- '!**/README.md'
pull_request:
branches:
- master
- staging
paths:
- 'MixtComp/**'
- '!MixtComp/docs/**'
- 'RMixtComp/**'
- 'RMixtCompIO/**'
- 'RMixtCompUtilities/**'
- '.github/workflows/RMixtComp-clang.yml'
- '!**/README.md'

jobs:
R-CMD-check:
runs-on: ubuntu-latest
container:
image: ghcr.io/r-hub/containers/clang16:latest

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:

- uses: actions/checkout@v3

- name: Checkout submodules
run: |
git submodule update --init --recursive

- uses: r-lib/actions/setup-r@v2

- uses: r-lib/actions/setup-pandoc@v2

- name: Install dependencies
run: |
R -q -e 'pak::pkg_install(c("deps::.", "any::rcmdcheck"), dependencies = TRUE)'

- name: Copy MixtComp files
working-directory: RMixtCompIO
run: |
make clean
make updateLib

- name: Compile Rcpp Attributes for RMixtCompIO
working-directory: RMixtCompIO
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: Rcpp::compileAttributes()
shell: Rscript {0}


- uses: r-lib/actions/check-r-package@v2
4 changes: 2 additions & 2 deletions .github/workflows/RMixtComp-eigen34.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ jobs:
fail-fast: false
matrix:
config:
- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-latest, r: 'release'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
Expand Down Expand Up @@ -67,7 +67,7 @@ jobs:
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "22.04"))')

- name: Install RMixtCompIO dependencies
working-directory: RMixtCompIO
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/RMixtComp.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ jobs:
fail-fast: false
matrix:
config:
- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-latest, r: 'release'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
Expand Down Expand Up @@ -67,7 +67,7 @@ jobs:
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "22.04"))')

- name: Install RMixtCompIO dependencies
working-directory: RMixtCompIO
Expand Down