Do not split multiallelic variants #640
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dennishendriksen
requested changes
Nov 4, 2024
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
Co-authored-by: Dennis Hendriksen <d.hendriksen@umcg.nl>
…nto feat/multiallelic
dennishendriksen
approved these changes
Nov 4, 2024
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End-to-end tests are not executed by Travis CI, please execute manually:
APPTAINER_BIND=$PWD bash test/test.shpassescram/complex | PASSED | 280163=completed output/cram/complex/.nxf.log
cram/multiproject | PASSED | 280164=completed output/cram/multiproject/.nxf.log
cram/nanopore_duo | PASSED | 277386=completed output/cram/nanopore_duo/.nxf.log
cram/nanopore | PASSED | 277387=completed output/cram/nanopore/.nxf.log
cram/single | PASSED | 280167=completed output/cram/single/.nxf.log
cram/trio | PASSED | 280168=completed output/cram/trio/.nxf.log
fastq/nanopore_adaptive_sampling | PASSED | 280146=completed output/fastq/nanopore_adaptive_sampling/.nxf.log
fastq/nanopore | PASSED | 277391=completed output/fastq/nanopore/.nxf.log
fastq/pacbio_hifi | PASSED | 277392=completed output/fastq/pacbio_hifi/.nxf.log
gvcf/liftover | PASSED | 277393=completed output/gvcf/liftover/.nxf.log
gvcf/multiproject | PASSED | 277394=completed output/gvcf/multiproject/.nxf.log
gvcf/trio | PASSED | 277395=completed output/gvcf/trio/.nxf.log
vcf/aip | PASSED | 277396=completed output/vcf/aip/.nxf.log
vcf/chd7 | PASSED | 277397=completed output/vcf/chd7/.nxf.log
vcf/corner_cases | PASSED | 277398=completed output/vcf/corner_cases/.nxf.log
vcf/deb_register | PASSED | 277399=completed output/vcf/deb_register/.nxf.log
vcf/empty_input | PASSED | 277400=completed output/vcf/empty_input/.nxf.log
vcf/empty_output_filter_samples | PASSED | 277401=completed output/vcf/empty_output_filter_samples/.nxf.log
vcf/empty_output_filter | PASSED | 277402=completed output/vcf/empty_output_filter/.nxf.log
vcf/filter_samples | PASSED | 277403=completed output/vcf/filter_samples/.nxf.log
vcf/liftover | PASSED | 277404=completed output/vcf/liftover/.nxf.log
vcf/multiproject_classify | PASSED | 277405=completed output/vcf/multiproject_classify/.nxf.log
vcf/mvid | PASSED | 277406=completed output/vcf/mvid/.nxf.log
vcf/str | PASSED | 277407=completed output/vcf/str/.nxf.log
vcf/trio | PASSED | 277408=completed output/vcf/trio/.nxf.log
vcf/vkgl_lb | PASSED | 277409=completed output/vcf/vkgl_lb/.nxf.log
vcf/vkgl_lp | PASSED | 277410=completed output/vcf/vkgl_lp/.nxf.log
vcf/vkgl_vus | PASSED | 277411=completed output/vcf/vkgl_vus/.nxf.log