Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Provide config for report + add params to this config #643

Merged
merged 42 commits into from
Nov 30, 2024
Merged

Provide config for report + add params to this config #643

merged 42 commits into from
Nov 30, 2024

Conversation

bartcharbon
Copy link
Member

@bartcharbon bartcharbon commented Nov 12, 2024 •
edited by dennishendriksen
Loading 

running tests ...
vcf/aip                                  | PASSED | 296863=completed test/output/vcf/aip/.nxf.log
vcf/chd7                                 | PASSED | 296864=completed test/output/vcf/chd7/.nxf.log
vcf/corner_cases                         | PASSED | 296865=completed test/output/vcf/corner_cases/.nxf.log
vcf/deb_register                         | PASSED | 296866=completed test/output/vcf/deb_register/.nxf.log
vcf/empty_input                          | PASSED | 296867=completed test/output/vcf/empty_input/.nxf.log
vcf/empty_output_filter_samples          | PASSED | 296868=completed test/output/vcf/empty_output_filter_samples/.nxf.log
vcf/empty_output_filter                  | PASSED | 296869=completed test/output/vcf/empty_output_filter/.nxf.log
vcf/filter_samples                       | PASSED | 296870=completed test/output/vcf/filter_samples/.nxf.log
vcf/liftover                             | PASSED | 296871=completed test/output/vcf/liftover/.nxf.log
vcf/multiproject_classify                | PASSED | 296872=completed test/output/vcf/multiproject_classify/.nxf.log
vcf/mvid                                 | PASSED | 296873=completed test/output/vcf/mvid/.nxf.log
vcf/str                                  | PASSED | 296874=completed test/output/vcf/str/.nxf.log
vcf/trio                                 | PASSED | 296875=completed test/output/vcf/trio/.nxf.log
vcf/vkgl_lb                              | PASSED | 296876=completed test/output/vcf/vkgl_lb/.nxf.log
vcf/vkgl_lp                              | PASSED | 296877=completed test/output/vcf/vkgl_lp/.nxf.log
vcf/vkgl_vus                             | PASSED | 296878=completed test/output/vcf/vkgl_vus/.nxf.log
done

@dennishendriksen dennishendriksen mentioned this pull request Nov 22, 2024
Closed
2 tasks
dennishendriksen and others added 25 commits November 22, 2024 11:22
@dennishendriksen
update field_metadata.json and vcf_report_config.json
1e1d807
@dennishendriksen
fix config
0c20c52
@dennishendriksen
Merge branch 'main' of https://github.com/molgenis/vip into feat/vari…
a3ff51a 
…ant_type_views
@dennishendriksen
fix:update config to be compatible with latest vip-report-template
e6a8e87
@bartcharbon
Updated decision tree and inheritance modules
8fc7b2d
@bartcharbon
update inheritance and decision tree images
1be85fa
@bartcharbon
Merge branch 'feat/variant_type_views' of https://github.com/molgenis…
de34c2c 
…/vip into feat/variant_type_views
@bartcharbon
update md5sums
9f8c630
@bartcharbon
Update decision-tree to 5.1.1
c62d489
@bartcharbon
update md5sum
f710e47
@bartcharbon
inheritance matcher 3.3.1
76a75b1
@bartcharbon
update md5sum
98feae5
@bartcharbon
inheritance match v3.3.2
0dbe10a
@bartcharbon
update md5sum
c6e0e6d
@bartcharbon
provide metadata to inheritance matcher
9855e05
@bartcharbon
Report version 7.2.0
c8d0594
@bartcharbon
Update template + md5sums
ee552fa
@bartcharbon
bump template in config
9fa2a81
@bartcharbon
Fix report module
aef67f8
@bartcharbon
Fix config creation
fe7e7d1
@bartcharbon
escape '(' and ')' in vip config
fdbbce3
@bartcharbon
Fix json config creation
a1133bd
@bartcharbon
attempt config fix
e640b53
@bartcharbon
Fix config double toJson
05161e2
@bartcharbon
Fix the config
91a9f3c
@dennishendriksen dennishendriksen marked this pull request as ready for review November 28, 2024 15:56
@dennishendriksen dennishendriksen merged commit 9ef60b3 into main Nov 30, 2024
1 check passed
@dennishendriksen dennishendriksen deleted the feat/variant_type_views branch November 30, 2024 11:45
@dennishendriksen dennishendriksen mentioned this pull request Nov 30, 2024
Closed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@dennishendriksen dennishendriksen dennishendriksen approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@bartcharbon @dennishendriksen