Calculate coverage using mosdepth and regions file

[bartcharbon]

cram/complex                             | PASSED | 288394=completed output/cram/complex/.nxf.log
cram/multiproject                        | PASSED | 288395=completed output/cram/multiproject/.nxf.log
cram/nanopore_duo                        | PASSED | 288396=completed output/cram/nanopore_duo/.nxf.log
cram/nanopore                            | PASSED | 288397=completed output/cram/nanopore/.nxf.log
cram/single                              | PASSED | 288398=completed output/cram/single/.nxf.log
cram/trio                                | PASSED | 288399=completed output/cram/trio/.nxf.log
fastq/nanopore_adaptive_sampling         | PASSED | 287196=completed output/fastq/nanopore_adaptive_sampling/.nxf.log
fastq/nanopore                           | PASSED | 287197=completed output/fastq/nanopore/.nxf.log
fastq/pacbio_hifi                        | PASSED | 287198=completed output/fastq/pacbio_hifi/.nxf.log
gvcf/liftover                            | PASSED | 287199=completed output/gvcf/liftover/.nxf.log
gvcf/multiproject                        | PASSED | 287200=completed output/gvcf/multiproject/.nxf.log
gvcf/trio                                | PASSED | 287201=completed output/gvcf/trio/.nxf.log
vcf/aip                                  | PASSED | 287202=completed output/vcf/aip/.nxf.log
vcf/chd7                                 | PASSED | 287203=completed output/vcf/chd7/.nxf.log
vcf/corner_cases                         | PASSED | 287204=completed output/vcf/corner_cases/.nxf.log
vcf/deb_register                         | PASSED | 287205=completed output/vcf/deb_register/.nxf.log
vcf/empty_input                          | PASSED | 287206=completed output/vcf/empty_input/.nxf.log
vcf/empty_output_filter_samples          | PASSED | 287207=completed output/vcf/empty_output_filter_samples/.nxf.log
vcf/empty_output_filter                  | PASSED | 287208=completed output/vcf/empty_output_filter/.nxf.log
vcf/filter_samples                       | PASSED | 287209=completed output/vcf/filter_samples/.nxf.log
vcf/liftover                             | PASSED | 287210=completed output/vcf/liftover/.nxf.log
vcf/multiproject_classify                | PASSED | 287211=completed output/vcf/multiproject_classify/.nxf.log
vcf/mvid                                 | PASSED | 287212=completed output/vcf/mvid/.nxf.log
vcf/str                                  | PASSED | 287213=completed output/vcf/str/.nxf.log
vcf/trio                                 | PASSED | 287214=completed output/vcf/trio/.nxf.log
vcf/vkgl_lb                              | PASSED | 287215=completed output/vcf/vkgl_lb/.nxf.log
vcf/vkgl_lp                              | PASSED | 287216=completed output/vcf/vkgl_lp/.nxf.log
vcf/vkgl_vus                             | PASSED | 287217=completed output/vcf/vkgl_vus/.nxf.log

[dennishendriksen]

debug statement? file is unchanged?