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Fix for nonzero remapped vertical diffusion tendencies
As raised in NOAA-GFDL/MOM6-examples#162, column integrals of the vertical diffusive tendences did not sum to zero when remapped from the model's native coordinate. Another call to diag_update_remap_grids was added after the call to applyBoundaryFluxesInOut (which changes the layer thicknesses due to freshwater fluxes) and the checks for negative thickness.
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