Fix seeding time

autumn/projects/sm_covid2/common_school/project_maker.py

@@ -214,10 +214,15 @@ def get_school_project_parameter_set(iso3, first_date_with_death, sero_age_min,
     }
     baseline_params = baseline_params.update(sero_age_params)
 
+    # Set seeding time 40 days prior first reported death
+    baseline_params = baseline_params.update(
+        {"infectious_seed_time": first_date_with_death - 40.}
+    )
+
     # update using MLE params, if available
-    mle_path= param_path / "mle_files" /  f"mle_{iso3}.yml"
-    if exists(mle_path):
-        baseline_params = baseline_params.update(mle_path, calibration_format=True)
+    # mle_path= param_path / "mle_files" /  f"mle_{iso3}.yml"
+    # if exists(mle_path):
+    #     baseline_params = baseline_params.update(mle_path, calibration_format=True)
 
     # update using potential Sensitivity Analysis params
     sa_params_path = param_path / "SA_analyses" / f"{analysis}.yml"
@@ -360,12 +365,12 @@ def get_school_project_priors(first_date_with_death):
     """
 
     # Work out max infectious seeding time so transmission starts before first observed deaths
-    min_seed_time = first_date_with_death - 100
-    max_seed_time = first_date_with_death - 1
+    # min_seed_time = first_date_with_death - 100
+    # max_seed_time = first_date_with_death - 1
 
     priors = [
         UniformPrior("contact_rate", [0.01, 0.06]),
-        UniformPrior("infectious_seed_time", [min_seed_time, max_seed_time]),
+        # UniformPrior("infectious_seed_time", [min_seed_time, max_seed_time]),
         UniformPrior("age_stratification.ifr.multiplier", [0.5, 1.5]),
 
         # VOC-related parameters