Finalise latex citation for param table

monash-emu · Jul 17, 2023 · 2a2055e · 2a2055e
1 parent b4187de
commit 2a2055e
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Showing 4 changed files with 32 additions and 16 deletions.
diff --git a/docs/tex/tex_descriptions/projects/sm_covid/param_table.tex b/docs/tex/tex_descriptions/projects/sm_covid/param_table.tex
@@ -1,9 +1,9 @@
 \begin{tabular}{llll}
 \toprule
-                   Parameter & Value & Unit & Evidence \\
+                   Parameter & Value & Unit &                      Evidence \\
 \midrule
-Active disease period (mean) &   8.0 & days &        - \\
-    Incubation period (mean) &  6.57 & days &        - \\
-        VE against infection &   0.5 &    - &        - \\
+Active disease period (mean) &   8.0 & days &                             - \\
+    Incubation period (mean) &  6.57 & days & Citation test \cite{zou-2022} \\
+        VE against infection &   0.5 &    - &                             - \\
 \bottomrule
 \end{tabular}
diff --git a/docs/tex/user/rragonnet/sm_covid.pdf b/docs/tex/user/rragonnet/sm_covid.pdf
diff --git a/notebooks/user/rragonnet/project_specific/School_Closure/param_tables.ipynb b/notebooks/user/rragonnet/project_specific/School_Closure/param_tables.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 110,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -14,7 +14,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": 111,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -23,7 +23,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 112,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -36,7 +36,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
+   "execution_count": 113,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -51,7 +51,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": 114,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -68,7 +68,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": 115,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -84,7 +84,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 17,
+   "execution_count": 116,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -93,7 +93,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
+   "execution_count": 117,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -106,7 +106,16 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
+   "execution_count": 118,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "tex_table = tex_table.replace(\"\\\\textbackslash cite\\\\\", r\"\\cite\").replace(\"\\\\}\", \"}\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 119,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -115,13 +124,20 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 20,
+   "execution_count": 120,
    "metadata": {},
    "outputs": [],
    "source": [
     "with out_path.open(\"w\") as f:\n",
     "    f.write(tex_table)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {

diff --git a/notebooks/user/rragonnet/project_specific/School_Closure/params_info.xlsx b/notebooks/user/rragonnet/project_specific/School_Closure/params_info.xlsx