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Fix cross-referencing in appendix
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romain-ragonnet committed Aug 1, 2023
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Expand Up @@ -94,6 +94,7 @@ \subsubsection{Capturing the effects of vaccination}
\input{../../tex_descriptions/models/sm_covid/stratifications/immunity.tex}

\subsubsection{Modelling multiple viral strains}
\label{strains}
\input{../../tex_descriptions/models/sm_covid/stratifications/strains.tex}


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Expand Up @@ -40,5 +40,5 @@
as well as recovered persons who are at risk of reinfection. The model allows for hybrid immunity
in the sense that the vaccination-induced relative reduction of transmission risk is multiplied with that induced by previous infection. Vaccination is also assumed to reduce the risk of hospitalisation and death

Emerging variants of concern (VoCs) may partially escape vaccine-induced (as well as infection-induced) immunity, as described further below (Table \ref{param_table} and \textcolor{red}{Table XXX for cross-immunity}).
Emerging variants of concern (VoCs) may partially escape vaccine-induced (as well as infection-induced) immunity, as described further below (Table \ref{param_table} and Section \ref{strains}).

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The other parameters used to represent strain-specific characteristics are presented in Table \ref{param_table}.

Seeding of each new strain into the model is achieved through the importation of a small number (10 per million population) of new infectious persons with the relevant strain into the model.
The seeding process is done over a ten-day period and the start of this period is set between 30 days before and 30 days after the emergence date
as reported by GISAID \textcolor{red}{Table XXX}. The exact start date is automatically calibrated by the MCMC algorithm.
The seeding process is done over a ten-day period and the start of this period is set to the emergence date reported by GISAID.
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