Update deps #43
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| name: build | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:RELEASE_3_17 | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Install dependencies | |
| run: | | |
| apt-get update | |
| apt-get install -y --no-install-recommends \ | |
| apt-utils \ | |
| libglpk-dev \ | |
| libcurl4-openssl-dev \ | |
| libxml2-dev \ | |
| libssl-dev && \ | |
| apt-get clean && \ | |
| rm -rf /var/lib/apt/lists/* | |
| - name: Install hypeR | |
| run: | | |
| options(repos = c(CRAN = "https://cran.r-project.org")) | |
| BiocManager::repositories() | |
| remotes::install_deps(dependencies = TRUE, repos = BiocManager::repositories()) | |
| remotes::install_bioc("BiocStyle") | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} |