🚀 Quick start to use source code

You could navigate to the website, but if you don't want to:

1. clone the repo

2. Install dependencies.

   Navigate into your new site’s directory and start it up.

   yarn install

3. Start the App!

   yarn start

   Your site is now running at http://localhost:8000!

4. Start Analyzing!

   Download the Example ZIP file It comes from here

   Unzip the file, and press the upload button in the app and upload the folder. Once uploading and initial training is complete, you can now:

   • Fetch images (Random, Positive, Negative, By Image, Training Set Positive/Negative, Confusing)
   • Train on images dragged from Unclassified into Positive and Negative grids
   • Evaluate (look at the confusion matrix on the training set)
   • Score All (calculate the enrichment scores with Empirical Bayes and look at/download the data)
   • Download the model spec and its corresponding weights files

Cite us:

@inproceedings{baidak2021cellprofiler,
  title={CellProfiler Analyst Web (CPAW)-Exploration, analysis, and classification of biological images on the web},
  author={Baidak, Bella and Hussain, Yahiya and Kelminson, Emma and Jones, Thouis R and Franke, Loraine and Haehn, Daniel},
  booktitle={2021 IEEE Visualization Conference (VIS)},
  pages={131--135},
  year={2021},
  organization={IEEE}
}